PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256492
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 266aa    MW: 28780.2 Da    PI: 8.769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256492genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.9e-1174120354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  MDP0000256492  74 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAAVISQVKEL 120
                    58*************************8.....7********9999888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.20571120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-974120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1275122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1375122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1077126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.16E-4159231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFYGFNSKS SFNPSLFDPF KHGASGFGGA LQGGAAAALP HSLVLDSEKG ELVKAPARVG  60
KKGVSEAKAL AALKNHSEAE RRRRERINAH LSTLRGLVPC TEKMDKAALL AAVISQVKEL  120
KKDALESSKG FLIPVDDDEV KVEPYVIXAG DGTISVKASV CCEYRSEHLS DLREALDSLH  180
LKMVKAEIAT LGNRVKNVFV LTSFKKDSND ANTEAYELLA SSVHQVLSSV LDKASPSPEY  240
SPRTTLPSKR XRLSYFDKID TSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371455.20.0transcription factor bHLH30-like
TrEMBLA0A498JT701e-180A0A498JT70_MALDO; Uncharacterized protein
STRINGXP_008371455.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.19e-34bHLH family protein