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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000255415 | ||||||||
Common Name | YABBY3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21270.3 Da PI: 7.7539 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.9 | 6.2e-67 | 6 | 161 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCGhCt+l svn+a a q + ++ ++++ + +++n++ ++++ ++++++ MDP0000255415 6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSPSWQDV--------QAQNYNYNSQNYRIDXGSSSKCNKKNATR 93 5689*****************************************99887765555543........45566666666655544443333333332 PP YABBY 100 .klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl MDP0000255415 94 dPTSDHXTEE----RGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 0223333333....469*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-71 | 8 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 106 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSPS 60 WQDVQAQNYN YNSQNYRIDX GSSSKCNKKN ATRDPTSDHX TEERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANNQAK LDNDPEKHLM 180 SRAALLNN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13276 | 0.0 | bud| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052446 | 5e-56 | BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA. | |||
GenBank | BT133581 | 5e-56 | BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281031.1 | 1e-139 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 8e-85 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D9ZJG6 | 1e-138 | D9ZJG6_MALDO; YABBY domain class transcription factor | ||||
STRING | XP_008385486.1 | 1e-138 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-83 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000255415 |
Entrez Gene | 103448029 |
Publications ? help Back to Top | |||
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