PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000255104
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 426aa    MW: 45952.8 Da    PI: 10.1483
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000255104genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.1e-16145232186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Liea  e+  +l+rg+lk+++W+ev++++    + +++ ++ +qCk++++ ++k+yk +k   + +  +  s++p+f++l+
  MDP0000255104 145 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreEYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFFERLD 232
                    7*************************************98766677899********************999997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-26143234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTAAVTAVYG QMVPSSIRSY QAGSPVTPVT GTLPLTQSNP DISTAPSPTL ATFCHRVLDL  60
DRTDPDRRGI AVASMEEDDE ILSPASGGSR SPTSQRQNGR ITVTVAVPPA QIPAPTPSQN  120
KTLTLALPSS GKQQGRSSGG GREDCWSEGA TAVLIEAWGE RYLELSRGNL KQKHWKEVAD  180
VVSSREEYGK IPKTDIQCKN RIDTVKKKYK LEKSKIGAGG GPSKWPFFER LDHLVGPSGA  240
KVGPGSGGGG SGSGEFSGHS QKIPVGVRHS QFLGHRAKRE GKIRQKDLVE WDSDESRELS  300
PFSIDNEVFE RKRRRTANVN ANANVGKGVG GGLKPCAVGR EKEGGGGGWG SSVRELTRAI  360
LKFGEAYEHA ETAKLQQVVE MEKQRMKFAK ELELQRLQFF MKTQVEISQL KSGSGRKSGV  420
NGGREC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310314RKRRR
2310315RKRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380767.20.0trihelix transcription factor ASIL2
SwissprotQ9LJG85e-57ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A498J4V50.0A0A498J4V5_MALDO; Uncharacterized protein
STRINGXP_008380767.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-51sequence-specific DNA binding transcription factors