PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254650
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 1040aa    MW: 113679 Da    PI: 8.8218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254650genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16837883455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  Er+RRdriN+++  L+el+P++      K +Ka++L +A++Y+ksLq
  MDP0000254650 837 VHNLSERKRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIDYLKSLQ 883
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd066603.29E-7835349IPR023210NADP-dependent oxidoreductase domain
SuperFamilySSF514302.49E-7136352IPR023210NADP-dependent oxidoreductase domain
Gene3DG3DSA:3.20.20.1005.2E-7941357IPR023210NADP-dependent oxidoreductase domain
PfamPF002482.5E-5647349IPR023210NADP-dependent oxidoreductase domain
PRINTSPR000691.0E-581105IPR020471Aldo/keto reductase
PRINTSPR000691.0E-5180197IPR020471Aldo/keto reductase
PROSITE patternPS000620180197IPR018170Aldo/keto reductase, conserved site
SuperFamilySSF474596.8E-20831897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12833882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-17836887No hitNo description
PfamPF000103.5E-13837883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19837891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16839888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0010287Cellular Componentplastoglobule
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MAMHLSSACF SALSERRVPR VRAVASENVT AEDDRVKLGG SDLKVTRLGI GAWSWGDTSY  60
WNNFQWDDRK MKAAKAAFDV SVDGGITFFD TAEVYGSRAS FGAVNSETLL GRFIKERKQK  120
DPGVEVAVAT KFAALPWRLG RQSVLGALKD SLNRLELSSV ELYQLHWGIW KINSGYLDGL  180
GDAVEQGLVK AVGVSNYSEK RLREAHTKLQ KRGIPLASNQ VNYSLIYRAP EENGVKSTCD  240
ELGITLIAYS PIAQGALTGK YTPENPPSGP RGQIYTPEFL TKLQPLLNRI KEIGEKYSKT  300
NTQVVLNWLI AQDNVVPIPG AKNGEQAAEF AGALGWRLNS EEVAELRALA TKIKPVTEDS  360
RGGFIGALHP APPLNFSENL GVLEHLVRFR SRLASGSRAN AEIDIELLVM VVWLLGGIVK  420
AQGSGRRCEG EGSGEGAKEK GEGKAAKEKG DIEGSMAGER TGLAVHLKLR GLAKNFPVAL  480
QAHLTTTKRG VERKRSAFDN SSLELVLPDH ELVELLWRNG QVVLNSQTHR KPSFNPNDQS  540
RQVQKHDQQS IRSGGLYGNS SNLIQDDDTV SLIHYPLEDS FDKEFCSHFF SELPSCDPIE  600
LDKPIKQFEG EKVVKFDASD TARLVSNSPR PNGKSSAGVE YPANPMPPPR YQYINSTDQQ  660
NQNQGGLGKI VNFSQFATPG KVSAGSSRGQ LGGKESGNLA QAEVRECSVM TVGSSYVGSN  720
QVLNDLDVSR ASSNCDGTTG LSAGHFYDNV HKIMPQSETG KTDTLDPTLT SSSGGSGSSF  780
GRGGNQSNVV NSNKRKGREA EDSECQSEAA ELESASAARS KSAHRSGSTR RSRAAEVHNL  840
SERKRRDRIN EKMRALQELI PHSNKTDKAS MLDEAIDYLK SLQMQLQVMW MGSGMAPMMF  900
PGMQHYISRM GMGMGMGMGP PALPSMHNPM HLPRHPLVDQ CMNMAPAANQ TVMCQPPVLN  960
PIDYHNQMQN PSFQEQYMRL MNFHHMQTMS QPMNMFRFGS QPLQQNQMMA PNGLSSGPFG  1020
GRAATNDPLS GKMSKSLKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dan_A1e-303735052742,5-diketo-D-gluconic acid reductase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1841846ERKRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.76320.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894150.0KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348351.10.0transcription factor PIF4-like
RefseqXP_008348352.10.0transcription factor PIF4-like
RefseqXP_008348353.10.0transcription factor PIF4-like
TrEMBLA0A498JA550.0A0A498JA55_MALDO; Uncharacterized protein
STRINGXP_008348351.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF632822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.42e-38phytochrome interacting factor 3-like 6