PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000254650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 1040aa MW: 113679 Da PI: 8.8218 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.6 | 7e-16 | 837 | 883 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K +Ka++L +A++Y+ksLq MDP0000254650 837 VHNLSERKRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIDYLKSLQ 883 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06660 | 3.29E-78 | 35 | 349 | IPR023210 | NADP-dependent oxidoreductase domain |
SuperFamily | SSF51430 | 2.49E-71 | 36 | 352 | IPR023210 | NADP-dependent oxidoreductase domain |
Gene3D | G3DSA:3.20.20.100 | 5.2E-79 | 41 | 357 | IPR023210 | NADP-dependent oxidoreductase domain |
Pfam | PF00248 | 2.5E-56 | 47 | 349 | IPR023210 | NADP-dependent oxidoreductase domain |
PRINTS | PR00069 | 1.0E-5 | 81 | 105 | IPR020471 | Aldo/keto reductase |
PRINTS | PR00069 | 1.0E-5 | 180 | 197 | IPR020471 | Aldo/keto reductase |
PROSITE pattern | PS00062 | 0 | 180 | 197 | IPR018170 | Aldo/keto reductase, conserved site |
SuperFamily | SSF47459 | 6.8E-20 | 831 | 897 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.12 | 833 | 882 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.22E-17 | 836 | 887 | No hit | No description |
Pfam | PF00010 | 3.5E-13 | 837 | 883 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-19 | 837 | 891 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-16 | 839 | 888 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0010287 | Cellular Component | plastoglobule | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1040 aa Download sequence Send to blast |
MAMHLSSACF SALSERRVPR VRAVASENVT AEDDRVKLGG SDLKVTRLGI GAWSWGDTSY 60 WNNFQWDDRK MKAAKAAFDV SVDGGITFFD TAEVYGSRAS FGAVNSETLL GRFIKERKQK 120 DPGVEVAVAT KFAALPWRLG RQSVLGALKD SLNRLELSSV ELYQLHWGIW KINSGYLDGL 180 GDAVEQGLVK AVGVSNYSEK RLREAHTKLQ KRGIPLASNQ VNYSLIYRAP EENGVKSTCD 240 ELGITLIAYS PIAQGALTGK YTPENPPSGP RGQIYTPEFL TKLQPLLNRI KEIGEKYSKT 300 NTQVVLNWLI AQDNVVPIPG AKNGEQAAEF AGALGWRLNS EEVAELRALA TKIKPVTEDS 360 RGGFIGALHP APPLNFSENL GVLEHLVRFR SRLASGSRAN AEIDIELLVM VVWLLGGIVK 420 AQGSGRRCEG EGSGEGAKEK GEGKAAKEKG DIEGSMAGER TGLAVHLKLR GLAKNFPVAL 480 QAHLTTTKRG VERKRSAFDN SSLELVLPDH ELVELLWRNG QVVLNSQTHR KPSFNPNDQS 540 RQVQKHDQQS IRSGGLYGNS SNLIQDDDTV SLIHYPLEDS FDKEFCSHFF SELPSCDPIE 600 LDKPIKQFEG EKVVKFDASD TARLVSNSPR PNGKSSAGVE YPANPMPPPR YQYINSTDQQ 660 NQNQGGLGKI VNFSQFATPG KVSAGSSRGQ LGGKESGNLA QAEVRECSVM TVGSSYVGSN 720 QVLNDLDVSR ASSNCDGTTG LSAGHFYDNV HKIMPQSETG KTDTLDPTLT SSSGGSGSSF 780 GRGGNQSNVV NSNKRKGREA EDSECQSEAA ELESASAARS KSAHRSGSTR RSRAAEVHNL 840 SERKRRDRIN EKMRALQELI PHSNKTDKAS MLDEAIDYLK SLQMQLQVMW MGSGMAPMMF 900 PGMQHYISRM GMGMGMGMGP PALPSMHNPM HLPRHPLVDQ CMNMAPAANQ TVMCQPPVLN 960 PIDYHNQMQN PSFQEQYMRL MNFHHMQTMS QPMNMFRFGS QPLQQNQMMA PNGLSSGPFG 1020 GRAATNDPLS GKMSKSLKST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dan_A | 1e-30 | 37 | 350 | 5 | 274 | 2,5-diketo-D-gluconic acid reductase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 841 | 846 | ERKRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.7632 | 0.0 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689415 | 0.0 | KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008348351.1 | 0.0 | transcription factor PIF4-like | ||||
Refseq | XP_008348352.1 | 0.0 | transcription factor PIF4-like | ||||
Refseq | XP_008348353.1 | 0.0 | transcription factor PIF4-like | ||||
TrEMBL | A0A498JA55 | 0.0 | A0A498JA55_MALDO; Uncharacterized protein | ||||
STRING | XP_008348351.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6328 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 2e-38 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000254650 |