PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254632
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 439aa    MW: 48652.6 Da    PI: 5.7992
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254632genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.7e-131153345
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   i n+  r+ +f kR + + KK +EL +LCd+ + vi+++++g+
  MDP0000254632 11 IVNDNARKSSFKKRNACLVKKMSELTTLCDISAFVIVYGEDGE 53
                   679999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.773153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20294IPR002100Transcription factor, MADS-box
CDDcd002661.23E-23285No hitNo description
PRINTSPR004043.6E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-121153IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MTRNKVKLAW IVNDNARKSS FKKRNACLVK KMSELTTLCD ISAFVIVYGE DGEESTVWPD  60
RMVVEQLIAR FQNIADLERW KKMMNQETYL KDRATKMQEQ IRKIMKKNNE LNTSNVLRQI  120
IQNGKPLLEF DDNVLTGVVF SLEERMKEIR KRIDYFEQAN PNHSPSTPSQ WGGDQSEMIS  180
QIGSDFPESL FMYKDLGKQI QNNYGPTVSV RSDIAIPPIS LFGNFTIAND MGMPLWNLGG  240
NCDGSDLGLP KKIRRVEGPG SGVGDDMGVH SGFFKYQNYV GSDNKYGNYK ESRPFWDWGV  300
GGDGSDKGLT SMNSEGMDGG TGMELEVFPS YATKVAGITS NVGCDLGLDM TSYNEDTGFR  360
IGDDKAGSNN GVFGHLPRQF NIGVRTESHR DLPSACFGGN GAGSDVRLFP GLFAGSNAGS  420
DVGHPYNVSK SWQFPFSSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380977.10.0MADS-box transcription factor PHERES 2-like
TrEMBLA0A498I7U50.0A0A498I7U5_MALDO; Uncharacterized protein
STRINGXP_008380977.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-24AGAMOUS-like 80