PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 942aa    MW: 106726 Da    PI: 8.7702
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.31.5e-1971145189
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    +fY  YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+v+ + ++HnH l
  MDP0000254218  71 DFYTLYAARMGFKVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 145
                    6***************************************765..............699***************************98 PP
2FAR165.91e-20228303190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fY+ YA+++GF++r+ +  +sk +g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++++++HnHe+ 
  MDP0000254218 228 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRQDSGRWVVDRFDKNHNHEFE 303
                    6***************************************999..............4899**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1571145IPR004330FAR1 DNA binding domain
PfamPF031013.0E-16228302IPR004330FAR1 DNA binding domain
PfamPF105515.4E-27403495IPR018289MULE transposase domain
PfamPF044343.4E-9677710IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.004677713IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-9688715IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MGLESNSTHF TNIRSLDTDS KIEDSGNNLV IEAYPLGMMP PMNAVDAEDG ESGVLEPYVG  60
LEFDSADVAR DFYTLYAARM GFKVRTGQLY RSRTDGSVSS RRFVCSKEGF QISSRTGCPA  120
LIRVQRRDSG KWVVDLFLKD HNHGLDLESS TEENHTLILQ KKSSMPTNTV VEVSHRPKVK  180
LIKAIEDKPH CPSGVISAKR LKRGEEEMQS EIDLSAGLEF NSANEAYQFY HVYAENTGFR  240
IRIGQLFRSK LDGSITSRRF VCSKEGFQHP SRVGCGAYMR IKRQDSGRWV VDRFDKNHNH  300
EFESHLEVQK KNLFSSKKFI EEEIGGLEIE DIVDINSGNL VKRRRENHIG SDWYSVLFDY  360
FQTKQAEDTG FFYAVEVDNG SCMSIFWADG RSRFSCSQFG DAIIFDTSYR KSIYLVPFAT  420
FIGINHHKQP VLLGCALVAD ESEKSFTWLF QTWLRAMSER RPLSIIADQD DMIQQAIMQV  480
FPGTHHRFSL WQIKAKESEH LSVMNSSFKY EYEKCIYQCQ TADEFETAWN ALLSRYGLKD  540
NAWLKAMYEK RRSWVPLYLR ATFFAGIPFN ESIESFFGAR FNAQTSLKEF VSQYERGLER  600
RREEEIKEDF NSFNLKAYLQ TKEPLEEQCR RFYTLNTFRV FQKELLQSYS YLGFKIYDEG  660
AIIRYLVRKC GNDDEKYVVT VGASIPEVSC SCRMFEFEGI LCRHVLRVFQ ILDIKEVPPC  720
YILRRWTRNA EYGIPCESEL GGNPRELKTL MVWSLREAAC KYIEAGATSL EKHKLAYEIM  780
RXGGRKLCWQ RLVTILMAPT SRSFVKVVAV LVFITTVTAA AAVVVPGRGG SRVGSRGGSG  840
GGGRSGYGGA GRSGSGVVVP VGGGSGSGGG STGGNSGHSG SPHSTPGSSS NKNARVPTYG  900
ISNTIVWYTA FHYLLNAMGR WLKKKKRRLN FVYFTLIQIS VI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1835843RGGSGGGGR
2921927LKKKKRR
3921928LKKKKRRL
4922927KKKKRR
5923927KKKRR
6923928KKKRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390803.20.0protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A251QXS70.0A0A251QXS7_PRUPE; Uncharacterized protein
STRINGXP_008390803.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]