PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253698
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 350aa    MW: 39872.6 Da    PI: 6.3347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253698genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-091050446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     + +  ++l  ++v++l  + W+ Ia +++ gRt++++k++w +
    MDP0000253698 10 FKQMQEKLQTEVVELLEAK-WSMIAGRLP-GRTANDVKNYWST 50
                     4455555556778888888.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4252IPR017877Myb-like domain
CDDcd001678.49E-41448No hitNo description
SuperFamilySSF466894.57E-61555IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-111953IPR009057Homeodomain-like
PfamPF002495.0E-62050IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MASGSSQSRF KQMQEKLQTE VVELLEAKWS MIAGRLPGRT ANDVKNYWST RLRWKKSASG  60
DKLKNHKPLQ QVAKVETTKT VVIRPRPRTF SKNLNYLSRK LAATNSNIQQ HNNQVLLQEP  120
LAVTSSLTPI EINGISETLL GDDNKDSSST VERALLCSGL QLEDLFTNFW IEEDDVMAHT  180
TSTTRTGLNC SITEQEEEVP LIPIDDDDDF DKWQKQYCMP RRRKNRTFRW KVEFGQPLCP  240
TMTDMIDQTX DFPSPLNPRI IESPSSFEKX GGKRKLELEY SLQREGTVAE AGPYLVLEKG  300
PTLPQFPLLE RKRDKGKKKE QAETDNQGEV GDEPQELSLP DLLPPPFVRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.264831e-178leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KQN21e-118A0A498KQN2_MALDO; Uncharacterized protein
STRINGXP_008344207.11e-121(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-13myb domain protein 4