PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000251291

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 494aa MW: 56244 Da PI: 6.3275

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000251291	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.7e-18	129	218	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+YA +GF +r ++s+ks + + +++fvC k+g+++ + + +++++ + rt+Ckakl +++ + +k++v+ + + Hn +++ MDP0000251291 129 FYNKYALAAGFGIREHSSRKSIDGECWLRKEFVCCKQGNKRXDGNPKTNKKGKMGDARTQCKAKLALNRGSgCEKFVVMVFIEGHNYPMS 218 9******************999999**************9999999***************99***********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-15	129	218	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.916	319	368	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-4	343	370	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.6E-4	344	362	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MTLTYNIRTR GGIFLRSYIG SGSFHGSTDS SIVGTTLSLT VDIILCWLVV EKFQGXELCS 60 KNQQQHSLLW ANYKYTNKYR ACLRCIRSVR IIRANKDLTA EXGRAHEVDE ELKPKLRMEF 120 DWLDERYMFY NKYALAAGFG IREHSSRKSI DGECWLRKEF VCCKQGNKRX DGNPKTNKKG 180 KMGDARTQCK AKLALNRGSG CEKFVVMVFI EGHNYPMSSA SHLFRSHNRV SEAKKTMIEQ 240 CMEANISISK QMALLEDLLD CIWDIESKEE LETSFAYQWK XKWPNLYTWF MFEKFKVDEL 300 KSLTYFLREH SRYKNEAMYE VLESAAXVTN RKXSLVDTTS SYTKCTCKEI ELQGLPCRHI 360 LAYLRMKQIE LLPEHYIXKS YVCTSGHVHG FAAYLLXTTE AFLGWLPDQS SWEALEDPDG 420 WNQRLDESLD GGELGNHVFS VLDAVEEGVE VADGGDEAVG GVDGVVGAFG LGCGEWSSGF 480 DFVGVFSEDG VMVV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MTLTYNIRTR GGIFLRSYIG SGSFHGSTDS SIVGTTLSLT VDIILCWLVV EKFQGXELCS  60
KNQQQHSLLW ANYKYTNKYR ACLRCIRSVR IIRANKDLTA EXGRAHEVDE ELKPKLRMEF  120
DWLDERYMFY NKYALAAGFG IREHSSRKSI DGECWLRKEF VCCKQGNKRX DGNPKTNKKG  180
KMGDARTQCK AKLALNRGSG CEKFVVMVFI EGHNYPMSSA SHLFRSHNRV SEAKKTMIEQ  240
CMEANISISK QMALLEDLLD CIWDIESKEE LETSFAYQWK XKWPNLYTWF MFEKFKVDEL  300
KSLTYFLREH SRYKNEAMYE VLESAAXVTN RKXSLVDTTS SYTKCTCKEI ELQGLPCRHI  360
LAYLRMKQIE LLPEHYIXKS YVCTSGHVHG FAAYLLXTTE AFLGWLPDQS SWEALEDPDG  420
WNQRLDESLD GGELGNHVFS VLDAVEEGVE VADGGDEAVG GVDGVVGAFG LGCGEWSSGF  480
DFVGVFSEDG VMVV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14375	1e-138	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-09	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	MDP0000251291