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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000250487 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
NAC |
Protein Properties |
Length: 282aa MW: 31735.3 Da PI: 5.194 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000250487 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 111.1 | 1.2e-34 | 79 | 198 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96
frF+Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wyf+s+++ +nr+t++gyWk+ g +++++s+ +
MDP0000250487 79 FRFDPTDEELVVHFLQRKATLLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRKA--------QNRVTSNGYWKTLGIEEPIFSSsssnS 165
9**********************999.99**************97777889******9974........58*******************977666 PP
NAM 97 gelvglkktLvfykgrapk.gektdWvmheyrl 128
+++vg+k+ L+fy g+ap+ g kt+W+mheyrl
MDP0000250487 166 TSKVGMKRYLTFYVGEAPNsGIKTNWIMHEYRL 198
667**********997765289*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MASPTVTFQN RRLGPSPIFW SEDARPRTRE THAPDVALGL AIDAGPTPRA SLVTRATQRW 60 TLSPQQFGPI TSLSSLLVFR FDPTDEELVV HFLQRKATLL PFHPDVIPDL HLYPYDPWEL 120 NGKALSEGKQ WYFYSRKAQN RVTSNGYWKT LGIEEPIFSS SSSNSTSKVG MKRYLTFYVG 180 EAPNSGIKTN WIMHEYRLSS SASDCASSST TTTTTTRSSK RRGQPKTVSN ACVATHEYSG 240 YILCRVYERD EEEDDDDDGT ELSCLDEVFL SLDDLDEISL PN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 62 | 222 | 7 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |