PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000249827

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 381aa MW: 40983.5 Da PI: 9.2618

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000249827	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	97	155	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ MDP0000249827 97 TENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSV 155 67899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.6E-33	99	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	100	154	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-25	100	153	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MQSFHSFAPQ EYFANKFPYN LSLKTQDPQR RVNQKTKMIQ ELFGGAGLNN IAGGGERKSL 60 SLHGGTTPSP SLSSSPSPSC STTTTATTTT TTGLSNTENL RCPRCDSSNT KFCYYNNYNL 120 TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKSVTVSTA SIGKTAAGKL KTVVSEIGRS 180 GLGGGFEQEV QASPIQWGSP QNSHILALLR SSHQNPNPNQ LCNSVNVKEE GGMNNMIGSR 240 MMTTEPAAMS TARTLGLDPV CEAPSLGLCS SFWRNNNNQN QPPPSHHQQN GFIVGHEVQS 300 SNIGIQELFQ RLRSTTSQSG SYYSDHLNNV VMSSSSSSLS SSSTSSILDS APVVGGGEMG 360 YWNPAFTAWS SDLPTTNGAY H

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MQSFHSFAPQ EYFANKFPYN LSLKTQDPQR RVNQKTKMIQ ELFGGAGLNN IAGGGERKSL  60
SLHGGTTPSP SLSSSPSPSC STTTTATTTT TTGLSNTENL RCPRCDSSNT KFCYYNNYNL  120
TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKSVTVSTA SIGKTAAGKL KTVVSEIGRS  180
GLGGGFEQEV QASPIQWGSP QNSHILALLR SSHQNPNPNQ LCNSVNVKEE GGMNNMIGSR  240
MMTTEPAAMS TARTLGLDPV CEAPSLGLCS SFWRNNNNQN QPPPSHHQQN GFIVGHEVQS  300
SNIGIQELFQ RLRSTTSQSG SYYSDHLNNV VMSSSSSSLS SSSTSSILDS APVVGGGEMG  360
YWNPAFTAWS SDLPTTNGAY H

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30421	0.0	stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-42	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339636.2	0.0	dof zinc finger protein DOF3.7-like
TrEMBL	D9ZIY2	0.0	D9ZIY2_MALDO; DOF domain class transcription factor
STRING	XP_008339636.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	MDP0000249827