PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000249060
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 284aa    MW: 32106.4 Da    PI: 9.0686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000249060genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.6e-051742131155
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  MDP0000249060 174 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASIYIMLLQ 213
                    7999**************99.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.61163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8174222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-6174219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.72E-4174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRNADLLPSL PSHLFNFGNN IDIQMTNWDA QMNMNRKFGF CMGSKAFESD NQNNMRAGDF  60
SLPLQQSSSL LTYQSAVNYP SGALRYDDIS EQSMLLDKKI SAPQFLDCQA IQNARKRPIE  120
VDDLGRLVGD TTALNDLYNN KRNKMTNINS QQQWHQESSM EQQNNKKLHH LPVRRSQKLS  180
DKITALQKLV SPYGKTDTAS VLQEASIYIM LLQEQIQQNL VRMLSSSYKN AAALHPQESG  240
SGQVLDLRSK GLCLVPVSIT QKVTMEERSD HLATSRKVVI ANHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371277.10.0transcription factor bHLH111-like isoform X1
TrEMBLA0A498JM751e-175A0A498JM75_MALDO; Uncharacterized protein
STRINGXP_008371277.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.17e-20bHLH family protein