PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000248312
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 355aa    MW: 39226.9 Da    PI: 5.8244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000248312genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08200247455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN ++  L+el+P +    +k    a +L + + +++sLq
  MDP0000248312 200 NHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIISHVQSLQ 247
                    79************************9....788889999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-15194265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.42E-9194251No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14196264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.411196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-8202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDPTGATVLG STLSGPEIES LQFREEIHRL MTAPENASSF TALLELAPTQ AMELLHLSTE  60
PDSAPPPAAI SGDPQHAPFV QHLPFNSSLP FPTNPAPIER AAKFSTFAGD GSPDTNSALS  120
NSGXELEKVK TEPAETDSNP SSSQLTLDLT KNNQRTSGKR KEREKKIKAP TKKCKTEIKE  180
DAEKMPYVHV RARRGQATDN HSLAERARRE KINARMKLLQ ELVPGCNKIS GTALVLDEII  240
SHVQSLQRQV EILSMRLAAV NPRIDFNFDG LLVAESGSLM ESNFAGMVTP LMCPEVPINR  300
NRQPYQQQWH FDALQQQGWG REEENHTFIT PEPSSSVGAV QQTQQLQTSH LEMEM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946296.10.0transcription factor bHLH48-like
SwissprotQ8VZ023e-89BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A498I5831e-180A0A498I583_MALDO; Uncharacterized protein
TrEMBLM5VYC80.0M5VYC8_PRUPE; Uncharacterized protein
STRINGXP_008392117.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-95bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]