PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000247737

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 1478aa MW: 165716 Da PI: 7.8936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000247737	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.5e-21	1213	1298	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 YneY ++GFs+rk++ ++ +n +f+Cskeg+r++++ e+++++r +rtgC+ak++ +e g+w+v++++ +HnHela MDP0000247737 1213 LYNEYTARIGFSIRKRQRRYD-KNVDLAALNFCCSKEGFRQDSNPC-EEKQTKRLDERTGCQAKIRFLLE-YGVWKVSTFDPKHNHELA 1298 7*************99998.5666************9888.99999*************9.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13515	2.9E-12	415	543	No hit	No description
SuperFamily	SSF51735	7.37E-89	787	1096	IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	4.8E-67	790	960	IPR016040	NAD(P)-binding domain
CDD	cd05230	0	792	1096	No hit	No description
Pfam	PF16363	2.3E-53	795	1089	IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.90.25.10	2.0E-51	961	1101	No hit	No description
Pfam	PF03101	3.0E-18	1213	1298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-18	1348	1421	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 1478 aa Download sequence Send to blast
MPTFLDHTNQ ARAMWLTCLA SAFRTCLACT IVALTTLYGP QSLRRQVTFP AFSYVTVLLI 60 APDATLGHTL CGFRLGLYAT AQTIGPAMLS LWLIGPAQLS TSTTAVAVGL AAFVVALPEF 120 THLVTKRIAL GQIVIMYVIA CINGGHTDAI MHPVHVAAST GVGVLACVLA LLIPFPRLAS 180 REVKQNLKLL AKNASEMLKI FVNAFCAEDS TSALASISQA NFLASTATKL FQTIKSHQES 240 MKWERVPLKL FSRRGYVNPG DRLQGLEIPF RGMEMALTCI PSFPVKVVNG ELSKDALLRL 300 VEHNMSLNLS TPFCSITVPE SKAENVSFLQ TLQNIPQIHQ DLPPIFFLFC INLLQGKLLS 360 RSKTVQEKFL VHQNGGATNS SKQNGLYFKI WSNLSTKVSS KRLMSAFKCS LSLGLAVFFG 420 LIYSKDDGYW AGLPVAISFA STREATFKVS NVKVQGTVLG TVYGVLGWFL FQRFLSMRLL 480 SLIPWFIFTN FLQRSRMYGQ AGGISAVIGA VLVLGRTNFG PPSEFAIARI TETFIGLSSS 540 IIVHLILQPK RASALAKVQL SRTLGTLQEC INSVSLQSGR ANLEDNQKRL KMHTEELGQL 600 IGEAEGEPNF WFLPFHSACY GKLLRSFSRM MDLLVLSAHA VGILEENSQT LEASWKEIVH 660 TLECDLEHFK KMVGSLMTCF EEITLIKSIA VLDQKSNISP DHELGKSRTP NIFRACSSEM 720 DKIMSSYLQH SEEVVDKIDA KSEELKSQMV FGLQRGSEKM ANNSTNGEHQ TTTKPPPLPS 780 PLRFSKFFQS NMRILVTGGA GFIGSHLVDR LMENEKNEVI VVDNYFTGSK DNLKKWIGHP 840 RFELIRHDVT ETLLVEVDQI YHLACPASPI FYKYNPVKTI KTNVIGTLNM LGLAKRVGAR 900 ILLTSTSEVY GDPLVHPQPE SYWGNVNPIG VRSCYDEGKR VAETLMFDYH RQHGIEIRIA 960 RIFNTYGPRM NIDDGRVVSN FIAQALRDEP LTVQNPGTQT RSFCYVSDLV DGLIRLMEGE 1020 HTGPINLGNP GEFTMLELAE TVKELINPEV EIKRVENTPD DPRQRKPDIT KAKELLGWEP 1080 KIKLREGLPL MEEDFRLRLG NVGRMHQIQN QRIAVFSSHV IQIPREAETL YPGQPPGIRK 1140 SIAAIMSCKD SNPYQGIMDG DSNSDEVIDV ESDKENIECN AQEKTPPIVN LEENYVEDLY 1200 GKIVKNEQEA YDLYNEYTAR IGFSIRKRQR RYDKNVDLAA LNFCCSKEGF RQDSNPCEEK 1260 QTKRLDERTG CQAKIRFLLE YGVWKVSTFD PKHNHELAIK EERQFLQSTC KISKAHTSVI 1320 KTMVNVGVRT TNTDSYLAEE VGGSQNIGFK KTDCYNFVSC VFLLDEKTAT FEWLFEAFLE 1380 SMGNQKPTTI FIDQCQAMAN AIMVVFPGTC HRLCIWHIST NATRNIPTLC GIPEFKRLFN 1440 KCLDECQTEL EFQHTWDEMI KEFNVAQNKW LKSLLCHS

Sequence ? help Back to Top

Protein Sequence Length: 1478 aa Download sequence Send to blast

MPTFLDHTNQ ARAMWLTCLA SAFRTCLACT IVALTTLYGP QSLRRQVTFP AFSYVTVLLI  60
APDATLGHTL CGFRLGLYAT AQTIGPAMLS LWLIGPAQLS TSTTAVAVGL AAFVVALPEF  120
THLVTKRIAL GQIVIMYVIA CINGGHTDAI MHPVHVAAST GVGVLACVLA LLIPFPRLAS  180
REVKQNLKLL AKNASEMLKI FVNAFCAEDS TSALASISQA NFLASTATKL FQTIKSHQES  240
MKWERVPLKL FSRRGYVNPG DRLQGLEIPF RGMEMALTCI PSFPVKVVNG ELSKDALLRL  300
VEHNMSLNLS TPFCSITVPE SKAENVSFLQ TLQNIPQIHQ DLPPIFFLFC INLLQGKLLS  360
RSKTVQEKFL VHQNGGATNS SKQNGLYFKI WSNLSTKVSS KRLMSAFKCS LSLGLAVFFG  420
LIYSKDDGYW AGLPVAISFA STREATFKVS NVKVQGTVLG TVYGVLGWFL FQRFLSMRLL  480
SLIPWFIFTN FLQRSRMYGQ AGGISAVIGA VLVLGRTNFG PPSEFAIARI TETFIGLSSS  540
IIVHLILQPK RASALAKVQL SRTLGTLQEC INSVSLQSGR ANLEDNQKRL KMHTEELGQL  600
IGEAEGEPNF WFLPFHSACY GKLLRSFSRM MDLLVLSAHA VGILEENSQT LEASWKEIVH  660
TLECDLEHFK KMVGSLMTCF EEITLIKSIA VLDQKSNISP DHELGKSRTP NIFRACSSEM  720
DKIMSSYLQH SEEVVDKIDA KSEELKSQMV FGLQRGSEKM ANNSTNGEHQ TTTKPPPLPS  780
PLRFSKFFQS NMRILVTGGA GFIGSHLVDR LMENEKNEVI VVDNYFTGSK DNLKKWIGHP  840
RFELIRHDVT ETLLVEVDQI YHLACPASPI FYKYNPVKTI KTNVIGTLNM LGLAKRVGAR  900
ILLTSTSEVY GDPLVHPQPE SYWGNVNPIG VRSCYDEGKR VAETLMFDYH RQHGIEIRIA  960
RIFNTYGPRM NIDDGRVVSN FIAQALRDEP LTVQNPGTQT RSFCYVSDLV DGLIRLMEGE  1020
HTGPINLGNP GEFTMLELAE TVKELINPEV EIKRVENTPD DPRQRKPDIT KAKELLGWEP  1080
KIKLREGLPL MEEDFRLRLG NVGRMHQIQN QRIAVFSSHV IQIPREAETL YPGQPPGIRK  1140
SIAAIMSCKD SNPYQGIMDG DSNSDEVIDV ESDKENIECN AQEKTPPIVN LEENYVEDLY  1200
GKIVKNEQEA YDLYNEYTAR IGFSIRKRQR RYDKNVDLAA LNFCCSKEGF RQDSNPCEEK  1260
QTKRLDERTG CQAKIRFLLE YGVWKVSTFD PKHNHELAIK EERQFLQSTC KISKAHTSVI  1320
KTMVNVGVRT TNTDSYLAEE VGGSQNIGFK KTDCYNFVSC VFLLDEKTAT FEWLFEAFLE  1380
SMGNQKPTTI FIDQCQAMAN AIMVVFPGTC HRLCIWHIST NATRNIPTLC GIPEFKRLFN  1440
KCLDECQTEL EFQHTWDEMI KEFNVAQNKW LKSLLCHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2b69_A	1e-135	783	1099	14	334	UDP-glucuronate decarboxylase 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5794	0.0	bud\| cell culture\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358382.1	0.0	PREDICTED: uncharacterized protein LOC103949017
TrEMBL	A0A498KAP7	0.0	A0A498KAP7_MALDO; Uncharacterized protein
STRING	XP_008357535.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-17	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	MDP0000247737