 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MDP0000247079 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
LBD |
| Protein Properties |
Length: 224aa MW: 25170.8 Da PI: 8.5782 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000247079 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 82.6 | 5.8e-26 | 2 | 112 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilk 82
+C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r ++ ++sl++eA r+ +Pv+Ga+g++l+
MDP0000247079 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRpgidnifgyQIKIKSLLFEAVGRTMNPVNGATGLLLS 97
6******************************************************************999************************** PP
DUF260 83 lqqqleqlkaelall 97
++++++q++ e++l+
MDP0000247079 98 GKWEVCQAAMETVLR 112
*********999876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60
PGIDNIFGYQ IKIKSLLFEA VGRTMNPVNG ATGLLLSGKW EVCQAAMETV LRGGSLEPLP 120
EYSRDIHYVR EHQVREVQRQ STKKKRPNFD VNXNDDYVEN FRSPDLNLSL TSATXLTSRT 180
KRRDCRAATP SVEDSETTTL XSSSPENNCT AGNLERTKLL RLFI
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
