PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246881
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Nin-like
Protein Properties Length: 1383aa    MW: 153478 Da    PI: 7.7099
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.23.9e-29559610152
         RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  MDP0000246881 559 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 610
                    589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.359544630IPR003035RWP-RK domain
PfamPF020423.8E-26562610IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2404.3E-23839921No hitNo description
SuperFamilySSF542772.68E-21839926No hitNo description
SMARTSM006662.8E-22842924IPR000270PB1 domain
PROSITE profilePS5174521.19842924IPR000270PB1 domain
CDDcd064077.08E-32843923No hitNo description
PfamPF005643.6E-17845922IPR000270PB1 domain
Gene3DG3DSA:3.30.70.3301.5E-1810021035IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.63910081134IPR000504RNA recognition motif domain
SMARTSM003604.0E-610091130IPR000504RNA recognition motif domain
SuperFamilySSF549286.79E-1310771133IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000762.2E-610851127IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.5E-1810861133IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF577561.86E-1111661213IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.0E-1111741212IPR001878Zinc finger, CCHC-type
SMARTSM003432.9E-411741190IPR001878Zinc finger, CCHC-type
PfamPF000981.1E-511741189IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.14711741189IPR001878Zinc finger, CCHC-type
PfamPF000982.3E-411951212IPR001878Zinc finger, CCHC-type
SMARTSM003437.1E-411961212IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.65811961212IPR001878Zinc finger, CCHC-type
SuperFamilySSF549286.79E-1312331242IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1383 aa     Download sequence    Send to blast
MFNNISELMN FDTYAGWCSP AATDQIAASL GMPSCPSVTY TPLDALNFVG HNGEQLPGTS  60
GAGTFNVGGS FNCGXKIVFE HVGTPQYGVS TDSNDANDSI VKLNNGSFQQ NNVMGMEDYM  120
IYRPPGLSLN EKMLKALSMF KETSGGGILA QLWVPMKHGD QYLLSTCEQP YLLDHILTGY  180
REVSRMFTFS AEEKQGSILG LPGRVFVSKT PEWTSNVNXY NKTEYLRVDY AANHQVRGSI  240
ALPIFDFDXE SSCCAVLELV STKEKSNFDT EMEIVCSALR AVNLKTNAPL RLLPQCLSKN  300
QRAALTEIND VLRVICHAHL LPLAMTWIPC CYSEGDDDGI KRVRVKGGFA NSDEKCILCI  360
EETACYVNDR RMQGFVHACA EHHLEEGEGI AGKALQSNHP FFINDVKAYN IYEYPLVHHA  420
RKYGLNAAVA IRLRSTYTGD DDYILEFFLP VNVKGSTEQQ LLLNNLSGTM QRICXSLRTV  480
SDAELVGLGS ANTGFQKETS PNIPQRNFQX TLSDSEMNSA ENVTFNVFNQ RNGGIERDNP  540
PKQAPSGSTR QAEKKRSTAE KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS  600
RWPSRKINKV NRSLRKIQTV LDSVQGVEGG LKYDPTTGGF VTTGSIIQEV DAPKNLLFPE  660
KNLLVENSEP VARHPISMPS YNTGESLTVK LEEDGSCVPT SHEKEVKTQS IPFMPQGDSK  720
PIAMDFGSCD PTNHGITPDS KGSYLAKEVN KWGHIQNSLR LDNSDCHFVS QNSSSLVAAD  780
EMDMGVHGDD GIVEYNQHSS SSLTDSSNDF GSTMQGYSSS TQSFEEQKHP QVETSTGENG  840
SKIIVKATYK EDTIRFKFEP SLGCLQLYEE VAKRLKLQNG TFQLKYLDDE EEWVMLVSDA  900
DLQECLEILD DIGKRCAKFM VRDIPSGVGS SGSSNFLGIL GHNVLVKYSS LLSPPPMEFM  960
LADVGIAMGH FSGTEDWDVR WTGNCRHIRY LAYTCLTMPR YDDRYGNTRL YVGRLSSRTR  1020
SRDLERLFNR YGSLCVGAFS PKCFLNLNDL VEGFLGLVAL LGGLWWEGDL GGIGGNFAEC  1080
GLGGKSCRVV RDVDMKREFA FVDFSDPRDA DDARYSLDGR EFDGSRLIVE FAKGVCVCVH  1140
LLYQTDSFFF VTLGKAPRGS REYLGRGPTP GSGRCFNCGI DGHWARDCKA GDWKNKCYRC  1200
GERGHIERQC KNSPKELSRG RSRSPVGSRS RRGRSRSPSY SRSRSYSRSR SPARRGRSED  1260
RYDRSRSPSY RKSPLPSKGG RKRSLTPDVD SPRGRRSPSP RNGRMEMEKE GSDYSPRVRS  1320
RSPVSPRLXS RSPVSPGRDS PVXRKYPSPS EADGRGRSPS PDRSPVADYD DDNRRTPRGS  1380
ESP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.55590.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945382.10.0protein NLP9-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A498ICB40.0A0A498ICB4_MALDO; Uncharacterized protein
STRINGXP_008359698.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]