PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000246258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 28350.3 Da PI: 9.2664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.6e-10 | 72 | 120 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h e+Er+RR+++ + Lr+llP + ++K s ++ +Av+YIk+Lq MDP0000246258 72 HRENERQRRQEMGILHASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHLQ 120 99***********************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.78E-7 | 65 | 124 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-11 | 67 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.935 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 72 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 72 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MFPLHQSKKL VFQISSNPRH HHDHTISEDR RVPEHGNMGK SRRRKLAVTL DYMMDDDHKS 60 NDHNKKKKMF IHRENERQRR QEMGILHASL RSLLPLEFIK GKRSISDHMN EAVNYIKHLQ 120 NRIKRLDAKR AELKKVSDLI SSSTSTDDHG GESSYGGSPS CFTVHPCCGG VQIVISTAIG 180 FRSGEEGLRF SISRVLEVLL EQGLCVVSCV SSKIDDRLLH TIQSEVNDLE SINLSALEHK 240 LDEVLPRSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009348628.1 | 1e-176 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A498KJX6 | 0.0 | A0A498KJX6_MALDO; Uncharacterized protein | ||||
STRING | XP_008376673.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 3e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000246258 |