PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000245462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 32393.1 Da PI: 7.4725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lv +++++G +W+ ++ g+ R++k+c++rw +yl MDP0000245462 16 KGPWSPEEDQKLVAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWVNYL 63 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E+e ++++++ G++ W++Ia++++ gRt++++k++w++++ MDP0000245462 69 RGNFSXDEEETILELHQAIGNR-WSAIAARLP-GRTDNEIKNHWNTHM 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.181 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.751 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.94E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAKRTRGCEK TVAVKKGPWS PEEDQKLVAY IQRYGIWNWS QMPKPAGLAR SGKSCRLRWV 60 NYLRPDIKRG NFSXDEEETI LELHQAIGNR WSAIAARLPG RTDNEIKNHW NTHMKKRFEX 120 AIESVHEEAK GFGDKEASKN KLSETEQLFL VDEATRASSS KMETTSSTSA SSRLFCPXWE 180 FXDXKGQIAE QSICASGVTF GDLQSLDSPV WQQEPIFPCD SYINHATSDY WYCHCHPSSP 240 PCFEGRHFEE RARQSQAKYP ITPFTVEVPI FQFIFQSQTI YT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 16 | 119 | 7 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15991 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074469 | 0.0 | DQ074469.1 Malus x domestica MYB21 mRNA, complete cds. | |||
GenBank | KC691248 | 0.0 | KC691248.1 Malus x domestica MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008345864.2 | 1e-162 | transcription factor MYB4-like | ||||
TrEMBL | A0A498IS13 | 1e-141 | A0A498IS13_MALDO; Uncharacterized protein | ||||
TrEMBL | Q2LME3 | 1e-141 | Q2LME3_MALDO; MYB transcription factor | ||||
STRING | XP_008345862.1 | 1e-168 | (Malus domestica) | ||||
STRING | XP_008345864.1 | 1e-168 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 5e-56 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000245462 |