![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000245233 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
bHLH |
Protein Properties |
Length: 762aa MW: 87263.2 Da PI: 6.3976 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000245233 | genome | GDR | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Mdo&pid=MDP0000245233) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 12.4 | 0.00029 | 623 | 640 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS
HLH 38 lsKaeiLekAveYIksLq 55
++Ka+i+e A+ YI++Lq
MDP0000245233 623 MNKATIVEDAITYIQELQ 640
69***************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 762 aa
Download sequence Send
to blast |
MEHPCAQDGI ICFQHEQKLD DLRSALKKVG GQAVEGLDMI DAVQRLGIDY HFEDEIDQIL 60 QKQHIISSTT AHGAHDPTDL HEVALRFRLL RQHGYFVSDD VFNNFKEGEG NFNQMLSEDI 120 KGLMSLYEAS KLSTEGEVVL EEAGKFSGHF LNSSLLHLDH HQARVVENTL RNPHHKSLAP 180 FMAKNFFVSG FQGTYNRWLN ILQTVAKTDL YMVQSLHQKE VVQVSKWWEE LGLSKELKFA 240 RDQPIKWYNW SMAGLTNPNL SDERIEFTKS VSFIYLIDDI FDVYGTLDDL TLFTEVVNRW 300 EIGAIEHLPD YMKICFKALY DMTDEISCKV YEKHGWNPLH SLKKTWASLC NAFLVEAKWF 360 KSGHLPRAEE YLKNGIISSG VNVMLVHIFF LLGEGITKQS VELLNGTPAI ISSTAAILRL 420 WDXXGSAKDE NQDGDDGSYI NYYLNEHQGK TMEEAQEHVT NMISQEWKKL NKVLVSPNPF 480 PAAFTKASLN LTRMVPLMYS YDDNQRLPSL DDARQLPTPG GTRSRESWRC GPATGRRRTP 540 FPGSTKRRIR HRFGSRGLRR IGPRRRSRFR RHHRHRSLSS GMSESRCRXG EEEGDTGDQQ 600 NGGVQLEWEH WSPLFMVGVW YSMNKATIVE DAITYIQELQ QKVNFLKDQL FEMEESSEET 660 LQPNKEETHA AEEMKKFGIQ TEVNVTKIDG NKLWVKTVLE KKRGGFTKLM EAMTGFGFEL 720 TDTSVTTSNG VMMVSSCITG FCCDKLEVEQ TRELMLEIIN GI
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during fruit ripening. {ECO:0000269|PubMed:15522848}. |
Uniprot | TISSUE SPECIFICITY: Expressed in receptacle tissue. Not detected in leaves or green fruit. {ECO:0000269|PubMed:15522848}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in monoterpene (C10) and sesquiterpene (C15) biosynthesis. Converts geranyl diphosphate (GPP) into S-linalool and farnesyl diphosphate (FPP) into (3S)-E-nerolidol. Exclusively present and highly expressed in the fruit of cultivated (octaploid) varieties. {ECO:0000269|PubMed:14630967, ECO:0000269|PubMed:15522848}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX848734 | 0.0 | JX848734.1 Malus x domestica linalool synthase (LIS) mRNA, complete cds. |