PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000244858

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 920aa MW: 104738 Da PI: 4.3546

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000244858	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.2e-10	843	896	1	46
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 r+ WT eE+e+l+++v+ +++ +Wk+I + k Rt+++++++w k MDP0000244858 843 RLYWTREEEEKLKELVNSFPTTgkyrCWKKILENGRdvfhKDRTPNDLRNKWGK 896 788*************************************************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	3.54E-5	310	367	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.2E-5	322	369	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50090	7.805	838	898	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.58E-7	840	899	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-5	842	900	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-8	844	896	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-8	845	896	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MPRREVLKHE ISSEQLSEEP SRALKLDVLY KSKLVIGGFS FQNLAFRCLE DLFRPQINSL 60 LLSTQAKGES NMVVSDKNLV KRLQMEVLRR ETEVPTVSRE EDLRIQKVLN QLELPHPYVK 120 KLIFCIGVLP ATFYAEELGG GDRARNTMIR HSMRLSSFAP FTLNHEILRL EVLLGSAIAN 180 LEEQFPKVQY FTDKLVSLPC IQLLVLRFLE DLFRPREVTG DVLEQIKNEP VKHNIVPLLG 240 CWQEDEAEVD GXFHLEPGTS NAAXPDVSXV EYDHISEHVF HEKKAISDEA KELMDCHRET 300 SDSXAFRNGK IDVSENRDFL GFLCSNGGQX LICNTSNCPX VFHQNFLDSD LICYKKGKYY 360 CPICSXSLAY ENRLGEIEEK LRRKAVAFDE VFSGCTDGCT XNEQXNARNE NGYXCDXQFD 420 DAQVHNQFVG VEDNEIKEGT EFEVEDENNG GNSVSCRGEG TNEIIRGGSG HPCVSELLEL 480 QQDEETAVEE NSGENEEDEG GKRVFVEKED EIENAELMQP ESMELPSNTI VLSDTESPLV 540 HKRREDNEIK EGMKFEVEDE NNDGDSVSCR GEGTNEVIRG DSEHPCLSEL LELQQDEETA 600 VEENSDKNEE DEGGKKVFAE KEDEIENAEL MQPESMEVPL NTIVLSDTES PVVHKRREDN 660 EIKEGMKFEV EDENNDSDNV SCRGEGTNEV IRGDSEHPCV SELLELQQDE ETAVEENSDK 720 NEEDEGGKRV FAETENEIKN AELMQPESLE MPSNTIVLSD TESPVVXKXX EKAPKSFTIV 780 LSDSSESDAS DTWSPSMEPE VSDTRPPLLG EIQPKHKXQK TREFGNQPTS SNLPLPRXRR 840 RMRLYWTREE EEKLKELVNS FPTTGKYRCW KKILENGRDV FHKDRTPNDL RNKWGKMRVK 900 GAVDHFLTLR ENICSIRKMN

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MPRREVLKHE ISSEQLSEEP SRALKLDVLY KSKLVIGGFS FQNLAFRCLE DLFRPQINSL  60
LLSTQAKGES NMVVSDKNLV KRLQMEVLRR ETEVPTVSRE EDLRIQKVLN QLELPHPYVK  120
KLIFCIGVLP ATFYAEELGG GDRARNTMIR HSMRLSSFAP FTLNHEILRL EVLLGSAIAN  180
LEEQFPKVQY FTDKLVSLPC IQLLVLRFLE DLFRPREVTG DVLEQIKNEP VKHNIVPLLG  240
CWQEDEAEVD GXFHLEPGTS NAAXPDVSXV EYDHISEHVF HEKKAISDEA KELMDCHRET  300
SDSXAFRNGK IDVSENRDFL GFLCSNGGQX LICNTSNCPX VFHQNFLDSD LICYKKGKYY  360
CPICSXSLAY ENRLGEIEEK LRRKAVAFDE VFSGCTDGCT XNEQXNARNE NGYXCDXQFD  420
DAQVHNQFVG VEDNEIKEGT EFEVEDENNG GNSVSCRGEG TNEIIRGGSG HPCVSELLEL  480
QQDEETAVEE NSGENEEDEG GKRVFVEKED EIENAELMQP ESMELPSNTI VLSDTESPLV  540
HKRREDNEIK EGMKFEVEDE NNDGDSVSCR GEGTNEVIRG DSEHPCLSEL LELQQDEETA  600
VEENSDKNEE DEGGKKVFAE KEDEIENAEL MQPESMEVPL NTIVLSDTES PVVHKRREDN  660
EIKEGMKFEV EDENNDSDNV SCRGEGTNEV IRGDSEHPCV SELLELQQDE ETAVEENSDK  720
NEEDEGGKRV FAETENEIKN AELMQPESLE MPSNTIVLSD TESPVVXKXX EKAPKSFTIV  780
LSDSSESDAS DTWSPSMEPE VSDTRPPLLG EIQPKHKXQK TREFGNQPTS SNLPLPRXRR  840
RMRLYWTREE EEKLKELVNS FPTTGKYRCW KKILENGRDV FHKDRTPNDL RNKWGKMRVK  900
GAVDHFLTLR ENICSIRKMN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028950255.1	0.0	uncharacterized protein LOC103431402
TrEMBL	A0A498HTK1	0.0	A0A498HTK1_MALDO; Uncharacterized protein
STRING	XP_009365403.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22823	2	4

Link Out ? help Back to Top
Phytozome	MDP0000244858