![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000243533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 361aa MW: 40325.3 Da PI: 8.0798 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79 | 4.5e-25 | 80 | 124 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e MDP0000243533 80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 124 79****************************************985 PP | |||||||
2 | QLQ | 55.6 | 1.6e-19 | 15 | 45 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+q+L++Q+l++Ky+a+++P+P +L+ MDP0000243533 15 PFTATQWQELEHQALIFKYMASGVPIPNDLV 45 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.4E-10 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.7E-14 | 15 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.524 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-21 | 81 | 123 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MMNGNPSSAA RNRYPFTATQ WQELEHQALI FKYMASGVPI PNDLVYSFKR RLDSSISSRL 60 FPHHPMGWGC YEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK 120 PVEVSSSSSA LSSPTAASTA TAEHLSSPSA TSPSSSLHRN LCKTSSSSYT LTPLSSSIST 180 QQTNQSNSSL YPFLNYPYSS SSSSSTPQLF LNSASYSDKD YRYFQGAKEG VDELAFFPDS 240 SANERNLLMN SYRGYSPTQQ SQEDQQQHCF VWGTDFKSVK TEKESAAAES QKSLHHFFGE 300 WQQPAKSSGD TWLDLASNSG GPNDDISWSV NCLHERTLIK HPFVIHEKGF DDAGTSPSSD 360 V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC770070 | 0.0 | KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008391391.2 | 0.0 | LOW QUALITY PROTEIN: growth-regulating factor 5 | ||||
TrEMBL | A0A498J2A7 | 0.0 | A0A498J2A7_MALDO; Uncharacterized protein | ||||
STRING | XP_008391391.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-61 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000243533 |