PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242865
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 533aa    MW: 57943.3 Da    PI: 6.5667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242865genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-082422761755
                    HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++f+ Lrel+P++    ++K +Ka+ L ++veYI+ Lq
  MDP0000242865 242 RQGFQMLRELIPHS----DQKRDKASFLLEVVEYIQFLQ 276
                    789**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-10241294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-7241279No hitNo description
PfamPF000104.4E-6241276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-12243291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKSTHDF LSLYSHSAAQ QDPRSPAQGG YLETHDFLQP LERMGKPCIA  60
KEETSAEIST TEKPPSQAAA QPTTSVEHIL PGGIGTYSIS HISHFNQGVP KPEGSPEFKV  120
AQASSTERNV DENSNCSSYT GSGFTLWEES AKNKGKTGKE NAVGERPAGT GNGPLRSXLR  180
SHLPTIIAAA SVLSQSLTIS NSTIVGVIGF DIIYAVFDTY MECQQVIWAE ELELHGDDEV  240
LRQGFQMLRE LIPHSDQKRD KASFLLEVVE YIQFLQERVN KYEGSCQGWN PDPAKLMPWR  300
NNHKLRESYC DQSRGMNGGS APALAFAATF DEKPTSVSPA IPGSCAQNPV ESDTSTETTV  360
KAVDHHPGIT SKPMPFPLSM QPNFFTPVRT SGAAAAVPQI PPRLPSDAEN TSRHQPMXCQ  420
TISRTTDGAA TRDKLKEQEL TIEGGRINIS SAYSQGLLNT LTQALQSSGV DLSLASISVQ  480
IELGKRANRR SPIPKSAIKE NEIPISTLGK KHSGIASSEE SEHAQKKLKT CRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164890.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948574.10.0transcription factor BIM1 isoform X1
RefseqXP_028948575.10.0transcription factor BIM1 isoform X1
TrEMBLA0A498I7B90.0A0A498I7B9_MALDO; Uncharacterized protein
STRINGXP_008393259.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-54BES1-interacting Myc-like protein 2