PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242456
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 777aa    MW: 86275 Da    PI: 8.3206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242456genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-164945761199
                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    ++++ l++p kf+++++g +++  + +l+ +sg + +v+l  + + ++ ++  GW+ Fvk+++L+ gD +vFk+dg+s+f  +v ++++
  MDP0000242456 494 NEKAVLRIPPKFVKNFNGWSPC--KCVLRGPSGLRRTVEL--EERXNGLFFNXGWQYFVKDHHLENGDLLVFKYDGESKF--KVAIYDT 576
                    455889*******888877555..8***************..**********************************9999..8888775 PP
2B333.85.8e-116747551497
                    T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     r ++p+k a +   ++   +k ++++d++grsW vkl++  +++++r+ +++G  e  kan++  gD vvF+++++s   l ++++
  MDP0000242456 674 YRATIPRKLAVAEdVLN---KKSIMIQDSTGRSWLVKLNVrgKGSQCRVDMATGLGECXKANQVLPGDEVVFEFVKQSL--LQIHIY 755
                    56789999986663333...457***************8855666677*************************887443..466665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd131322.98E-16051482No hitNo description
TIGRFAMsTIGR007974.5E-6961457IPR002528Multi antimicrobial extrusion protein
PfamPF015542.3E-2761219IPR002528Multi antimicrobial extrusion protein
PfamPF015541.2E-26281441IPR002528Multi antimicrobial extrusion protein
PROSITE profilePS5086312.055484577IPR003340B3 DNA binding domain
SMARTSM010191.5E-8494577IPR003340B3 DNA binding domain
PfamPF023626.6E-14494575IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18496582IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-18497579IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-14499575No hitNo description
SuperFamilySSF1019361.86E-9657757IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-9657756IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418661758IPR003340B3 DNA binding domain
SMARTSM010190.0057664758IPR003340B3 DNA binding domain
PfamPF023621.6E-8675756IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MLASSGGLXR SENTEVLLVE AGGGGGGGDG DQEGAKKLPR WWWKXVLDVE EAKKQVMFSL  60
PMVFTNLFYY LITLVSVMFA GHLGDLELAG ATLANSWAIV TGFAFMVGLS GALETLCGQG  120
FGAKLYKMLG IYLQASCIIS FFFCFIISII WFYTEPILIL LYQDPQISKS AAVFMKFLIP  180
GLFAYGFLQN ILRFIQTQFV VLPLLFSLVP VVIHVGIAYG LVHWTALGYK GAPLAASISL  240
WISVLALAMY VVCSKKFEHT WQGFSLESFH YVVYDLKLAL PSALMVCLEE WAFEILVLMG  300
GLMPNSKETT SLIAMCVNTE AIAYMIMYGL SAAASTRVSN ELGAGNPNKA KNAVAVTFKL  360
SLLLSFAIVL ALALGHNTWT HFFSDSHIIA DQFASMVPLL TISIVVDSVQ GVLSGVARGC  420
GWQHLTVYVN LATFYLIGMT ISSLLGFKFK LXAKGLWIGL ICGLSCQAGX LLFLTLRTKW  480
SVLDLPDLSD VEENEKAVLR IPPKFVKNFN GWSPCKCVLR GPSGLRRTVE LEERXNGLFF  540
NXGWQYFVKD HHLENGDLLV FKYDGESKFK VAIYDTTACE KDVEIADSWR IRSSVPLFNN  600
GHARVKEEIV ELETENYNEN CENKVFISGR KKWNHLISGK IPSHDQREAT STQPVLSKSK  660
NSCFIAIFNN PRRYRATIPR KLAVAEDVLN KKSIMIQDST GRSWLVKLNV RGKGSQCRVD  720
MATGLGECXK ANQVLPGDEV VFEFVKQSLL QIHIYRVEAL GGKSLRLLPR NVRENEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y50_A3e-94494808440Protein DETOXIFICATION 14
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340803.10.0PREDICTED: protein DETOXIFICATION 18-like
SwissprotQ9LUH30.0DTX18_ARATH; Protein DETOXIFICATION 18
TrEMBLA0A498INX70.0A0A498INX7_MALDO; Protein DETOXIFICATION
STRINGXP_008386196.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-14B3 family protein
Publications ? help Back to Top
  1. Diener AC,Gaxiola RA,Fink GR
    Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.
    Plant Cell, 2001. 13(7): p. 1625-38
    [PMID:11449055]
  2. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  3. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  4. Dobritzsch M, et al.
    MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides.
    Plant Cell, 2016. 28(2): p. 583-96
    [PMID:26744218]