PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000240375
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 906aa    MW: 103575 Da    PI: 6.004
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000240375genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82.1e-2490174388
           FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                    Y++YA+ vGF+vrk+  ++sk +g++++r+f+Cs+eg+r+++k++  + +++r+etrtgC a++ ++++ d+k++vt++e++HnH+
  MDP0000240375  90 YKNYARLVGFNVRKDWVNRSKVHGQVVSRKFTCSREGYRQNDKRD-ANVKKRRKETRTGCLAHVIITRQPDSKYRVTQFEEQHNHD 174
                    9*****************************************999.999999*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-2290174IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26296389IPR018289MULE transposase domain
PROSITE profilePS509669.94576612IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-6587614IPR006564Zinc finger, PMZ-type
PfamPF044342.7E-4589612IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MAISMTNGNA VGSMEREDED FGSLHEGVMD VGLQTANRLD LNVEQVFCSP KFVSINATQP  60
NISSIGANSI DSVLKLGSEF ESDEHAYKSY KNYARLVGFN VRKDWVNRSK VHGQVVSRKF  120
TCSREGYRQN DKRDANVKKR RKETRTGCLA HVIITRQPDS KYRVTQFEEQ HNHDNINPSI  180
AQMLPPQRES SVPQAADSVE DFGPLSKLAF DLMSRRPRIR ESADSFAFDF DNHLQSERTR  240
DTKEGEVGRL LHYFQRQHFE NPSFFYAIQV DTDDKVSNIF WADDNMVSDY EHFGDVVCLD  300
SVFRTDTKCL PFVQFIGVNH HKQVVIFSAA LLYDGTVQSF EWLFQTFLET MSGKKPKVIH  360
TDQDPALVEA INSVLPETDH RICTWQMCHS SLKHLHHVVE DTEAFANDFT SCIYDHKDED  420
DFVRAWGDML DNYGLRKNDW LKWMFREREK WAVVYDRNTF FVDMKGSHLV ESLFNDLRKY  480
LSSDPDVLHF FKHFERVVDE QRCKEIEASV EMNRCIPRLM GNVILLRHAS NVYTPRAFQV  540
FQRGYEKSLD IVVNQCSEND SLFEYKTNIF GKSTEHTVTF NSSDDIVICS CKKFESVGFL  600
CSHALKVLDH RNIKVLPSKY ILKRWTKDAR LGSARVSDAI SDNPKLIVGS RYKILCHRIL  660
MLPARASESE EAFQFAVRQL DQVMEGVEKI LTLSPEDAQA FTSSRTAANV SDTEHAKIFL  720
DEFGIDNQDD NRVKGAEEKD GAVLDRGPLT NVNGEYNASI QNTGSCISSL LLYASPQAAT  780
ENAIIQASPG LHLLQLYEMI KGLYNFETNQ VVQCMHEQDN LVINQQTDPN MFFSNEHDSP  840
GHSQLLEEPL INGVYQEPVS STPEVRQAMD LDVQTPSSFL VFDGSPTRDV KHRIKGRHKK  900
MCFSPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377199.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X1
RefseqXP_008377207.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBLA0A251QN440.0A0A251QN44_PRUPE; Uncharacterized protein
STRINGXP_008377199.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5