PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000240321
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 554aa    MW: 63525.8 Da    PI: 6.1247
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000240321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix941.5e-29102187187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+r+ k+Ckek+enl k+ykk+keg+++r  ++ +++++f+qlea
  MDP0000240321 102 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRTGKKCKEKFENLYKYYKKTKEGKSGR--QDGKHYRFFRQLEA 187
                    8*************************************999*****************************98..55667*******85 PP
2trihelix70.14.1e-22402488185
       trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rWt++ev  Li++r++ e ++++++  ++++ Wee+++km + g++rs  +Ckekwen++  ++ ++e++k +++e++++  yf+q+
  MDP0000240321 402 RWTEHEVASLIQLRTSSELTFQESEylKEGGVWEEIAAKMGSLGYTRSGGECKEKWENISICFRMTTEWNKMHKQETKTNNMYFSQM 488
                    8*********************9977799********************************************999999999****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.00495160IPR017877Myb-like domain
SMARTSM007170.3599162IPR001005SANT/Myb domain
PfamPF138371.4E-20101188No hitNo description
CDDcd122031.30E-20101167No hitNo description
PROSITE profilePS500907.457395461IPR017877Myb-like domain
SMARTSM007170.0013399463IPR001005SANT/Myb domain
CDDcd122039.38E-19401468No hitNo description
PfamPF138374.6E-15402488No hitNo description
Gene3DG3DSA:1.10.10.606.6E-6402460IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MASKTQFCKP LQFPEQFSVH LNLTPPPPPP PHYHHHPIAV GSEIVAAAGL LDHHRYTSMI  60
TTTACHPSIT ISGNASAAAA MYGIESEHGW NNIDGANNNN SRWPRQETLT LLEIRSALDS  120
KFKETNQKGP LWDEVSRIMA EEHGFQRTGK KCKEKFENLY KYYKKTKEGK SGRQDGKHYR  180
FFRQLEAIYG DHHQSSNQSS IYGKSNXLLC HTTPSGXFDR DQNQEEVVVQ DQKIISCESL  240
SSNNSTEFDQ TPPSENNDDN ESLSAIGYFM MNQSMESLKN ENKSYATQVK KKWKAKVEEF  300
VSSQMGKVMK TQEALMEKMV KXIEDSADER IAKEEEWRKQ EAAKYEREVH EFWAKERAWV  360
ETRDAAIMEA LSKYTGQGAY NNNGKDDIAK ETGNDNRKNY PRWTEHEVAS LIQLRTSSEL  420
TFQESEYLKE GGVWEEIAAK MGSLGYTRSG GECKEKWENI SICFRMTTEW NKMHKQETKT  480
NNMYFSQMSC YEEGREVWNQ RQDGMGVQLM DEGVSPSCSN MDVNSSSLHI PFNGGENLWD  540
ERYSHVTNSP RDNC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375584.20.0trihelix transcription factor PTL-like
TrEMBLA0A498JBB50.0A0A498JBB5_MALDO; Uncharacterized protein
STRINGXP_008375584.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-93Trihelix family protein