PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239161
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 1086aa    MW: 121116 Da    PI: 7.9467
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.85.2e-14131169241
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                    ++k+CnCk+s+Clk+YCeCfaag +C+  C+C++C+N+ +
  MDP0000239161 131 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCSNCHNNVN 169
                    89**************************.********986 PP
2TCR49.96.3e-16215254140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000239161 215 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 254
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.1E-17130170IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903131255IPR005172CRC domain
PfamPF036382.7E-11132167IPR005172CRC domain
SMARTSM011148.4E-20215256IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-12218253IPR005172CRC domain
Gene3DG3DSA:3.40.50.18201.1E-39735949IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534742.13E-30752912IPR029058Alpha/Beta hydrolase fold
PfamPF003263.2E-7806905IPR001375Peptidase S9, prolyl oligopeptidase, catalytic domain
Gene3DG3DSA:3.40.50.18201.1E-3910051085IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534742.13E-3010071085IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008236Molecular Functionserine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MEQSETVSEV APKKLARQLD FTTVYRASAS AALTDVQLQL QTPSQAQQQP QISPARPQLH  60
LHLQSPQPAA VQLSKQLTPP PAIPQFQARR SPAPPANVRI PHPVHKLSQV RKQDSPVSRQ  120
RGDEKDCTPK KQKQCNCKNS RCLKLYCECF AAGIYCDGCN CSNCHNNVNN EAARQDARGA  180
ILERNPNAFQ PKIASSPQES RDGREDVXXI QAAGKHNKGC HCKKSGCLKK YCECFQANIL  240
CSENCKCMDC KNFEGSEERR ALYHEGHNTA AYMQQANAAI SGAIGTSGYG TPLVSRKRKG  300
YELYFTTGNQ STHPIXQPQQ ENHLRPHMAS SSQLSVPIFR ADAAVPRPSK TTIYRSPLAD  360
IIQPKNVKDL CSRLVVVAGA AAKALAGDMQ RETINTSTTS STQEXEEHKM EHDKQHDXQL  420
GVNEADREVS TFSGSNGVDV QNSRPMSPVT LALMCDEQDK MFMEAGLPKG AGTDNPSMPE  480
KPTQEIGFTE IYXEQERLVL TGFRDFLNHL ITRGSIKETM CSPQAKTERL SQKESVQVGT  540
AKPNTEPRYQ KEVYINGIVK SPLSSANGKI LQSATTVTSG DNDLTLKLDL VEXLGLKTWD  600
LVEELEKAYP RKALFQKAPI LQSPSTTXSH VAPPPSHTCL SVPPSPPKLS YKYRTKSQAR  660
SSRSKLSDCE VSEMDAQKLR SEFLQVLRSR RSGEVPMLVE XAKPVANPLF QEDNPASFSE  720
AMNACPKASI PDFKDKLQEE NLYLXTEAGE QGRLPVLILS MKENCTQKRP AVVFLHSTNK  780
NKEWLRPLLE VPDLFVRSFN YNLHSAYASR GYVAIAIDSR YHGERARNIS TYRDALVSAW  840
KKGDTMPFLF DTVWDLIKLA DYLTQREDID PTRVGITGES LGGMHAWFAA AADTRYAVVV  900
PIIGVQGFRW AIDNDKWQAR VDSIKPVFEE ARIDLRKSVI DKEVVEKVRY ILDSQIRIDL  960
GESDLYIQYF KLEGVIDCYY EVGRQLTIYL SDQVWDRIAP GLASQFDSPY XIPAIAPRPL  1020
LILNGAEDPR CPLAGLEVPN SKACKAYADX HAIDNFKFIA QPGIGHQMTP LMVVEASDWF  1080
DQFLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-351222641132Protein lin-54 homolog
5fd3_B3e-351222641132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303420.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840282e-44AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378097.20.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A498J8320.0A0A498J832_MALDO; Uncharacterized protein
STRINGXP_008378097.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF596322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-111Tesmin/TSO1-like CXC domain-containing protein