PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000237396
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 588aa    MW: 66011.9 Da    PI: 6.6503
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000237396genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.52.3e-26316370156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH++F++aveqL G ++A+P++il+lmk +gLt+++v+SHLQkYR++
  MDP0000237396 316 KMKVDWTPELHKKFMKAVEQL-GVDQAIPSRILDLMKTEGLTRHNVASHLQKYRMH 370
                    5689*****************.********************************96 PP
2Response_reg36.32.9e-13201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                    vl+ d + + ++ +r+ le  +y +v+++ + +eal  +  +   +++ ++ ++  +   G+++l++ +e    lpii+ +     +++ e++ +G
  MDP0000237396  20 VLLLDGDTTSASQIRSNLEAIDY-IVTAFCNETEALSAFSSNPesFHVAIIEVNANNgHWGFQFLETVKE----LPIIMTSNIHCLSTMMECIALG 110
                    78889999999************.***************777677***********999*********99....55777776666*********** PP

                    ESEEEESS--HHHHHH CS
   Response_reg  94 akdflsKpfdpeelvk 109
                    a +fl Kp+++++l++
  MDP0000237396 111 AVEFLLKPVSEDKLRN 126
                    *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-1716134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-1716169No hitNo description
SMARTSM004489.9E-618128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.73819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-920127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.74E-1021131No hitNo description
PROSITE profilePS5129414.572313372IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-25314372IPR009057Homeodomain-like
SuperFamilySSF466893.14E-17315373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23316371IPR006447Myb domain, plants
PfamPF002496.0E-8319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MVCTANDLQQ WNDFPKGLRV LLLDGDTTSA SQIRSNLEAI DYIVTAFCNE TEALSAFSSN  60
PESFHVAIIE VNANNGHWGF QFLETVKELP IIMTSNIHCL STMMECIALG AVEFLLKPVS  120
EDKLRNIWQH VVHKAFNAGG SVISETLKPV KVSVVSMLQP KQENEEQNCK ISMETENVLR  180
VHENDQEQSA GSDKYPAPSM PQIKQGSRLL DHGDCLYQIN YMSEKVSGEH DSESKSIETM  240
FCNPIDERNL RMREPRHMPR KTVIKEENDS GDGSKSEVNM SHHPDNIDSG NDNGAAAENL  300
SKASVPNXSC KSNXKKMKVD WTPELHKKFM KAVEQLGVDQ AIPSRILDLM KTEGLTRHNV  360
ASHLQKYRMH KRHILPKDED RRLPPPHHPP GARDQTHQTS YYPHSHRPIM AFPPYHYNNT  420
TLSMPPAYPM WGSQPPAGSH PATVQMWGQP GYPHSHWQLS DQSWQYWNPY PGVMYCSSSS  480
QMQAEAWGCP VMPPEQGGYS SYPQNASGFQ SAGGHVVENG HRYSMPRNSF NIHLSEEVVD  540
KVMKEAISKP WLPFPLGLKP PSTEGVLAEL TRQGICNIPQ INGSHTQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16315369458ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164940.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377736.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028951715.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028951716.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028951717.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A498HIV60.0A0A498HIV6_MALDO; Uncharacterized protein
STRINGXP_008377736.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein