PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000236134

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 863aa MW: 99619.2 Da PI: 8.642

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000236134	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	4.9e-25	115	223	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e++++ +++ r++r+ ++t+Cka+++vk++ dg+w MDP0000236134 115 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRHGSKRESNTAeapesvsnpressicdsvkRKRGRSNRSWEKTDCKASMHVKRQ-DGRWI 209 5**************************************9999989***********998889999*************9.* PP FAR1 78 vtkleleHnHelap 91 + ++ +eHnHe++p MDP0000236134 210 IRSFIKEHNHEIFP 223 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	115	223	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-26	342	433	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	622	658	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-5	632	656	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	633	660	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence Send to blast
MAKWNASTGV ATRNSEALTF IVRSFPYSRP PIDLSYSPDP GRFSSDLEXP SGECRKEGIR 60 DHAIVKATNG PANDKEDTGQ NENKAVARDE INLNSTKDLE PHDGMEFESK EAAFSFYREY 120 AKSVGFAAVI KASRRSRVSG KFIDAKFACT RHGSKRESNT AEAPESVSNP RESSICDSVK 180 RKRGRSNRSW EKTDCKASMH VKRQDGRWII RSFIKEHNHE IFPDEAYYFR GHRDLDLGRC 240 DVDRLLAIRR RTKKMYVDMA KQSGGFKKLD NQKGGGTNQS LSRKHLSLEE GDAQVXLDHF 300 LYMQDENPNF FYAVDLNEEQ RLKNVFWVDA KGRLDYGNFS DVVFLDTAYI KNEYKLPFVP 360 FIGVNHHFQF ILLGCALLAD ESKSSYVWLI RAWLKAMGGR APRVILSSRD KVLKEVITEV 420 LPDSRHCFCL WHIFGKIPDK LGYVIRQHEK FMVKFNKCVF KSWTNEQFEK RWWKMVDRFN 480 LRDDXWFQSL YEDRGRWIPT YMXDTFLAGM STTQRLEGIN CFFDKFMQRK TPLKEFLEQY 540 KTILRERYEE EVKADFETXH KQPALRSPSP YGKQMATMYT HAVFKKFQVE VLGVVACHPK 600 KETEDGLIKT FRVQDFVESQ DFIVEWNEMT SDVSCLCRSF EFKGFLCRHV LIVLQMSGVH 660 SIPSQYILKR WTKDAKNRQT TREGSDAAES RVQRYNDLCR RAFKLSDEGS LSQESYSIAF 720 NALEEALRSC ESINNSIQNV TEPISPKTHX PQGSEGENQG NNNIETNKKN GASKKXQVHS 780 EPEAIXIGMQ EXWQQVAELT SRAPNFDGYY GSQQIVQGMA QLHFRPQPIP SYFDIQDGLQ 840 DVVKNMGMKQ HXAATEKSKI EGI

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence Send to blast

MAKWNASTGV ATRNSEALTF IVRSFPYSRP PIDLSYSPDP GRFSSDLEXP SGECRKEGIR  60
DHAIVKATNG PANDKEDTGQ NENKAVARDE INLNSTKDLE PHDGMEFESK EAAFSFYREY  120
AKSVGFAAVI KASRRSRVSG KFIDAKFACT RHGSKRESNT AEAPESVSNP RESSICDSVK  180
RKRGRSNRSW EKTDCKASMH VKRQDGRWII RSFIKEHNHE IFPDEAYYFR GHRDLDLGRC  240
DVDRLLAIRR RTKKMYVDMA KQSGGFKKLD NQKGGGTNQS LSRKHLSLEE GDAQVXLDHF  300
LYMQDENPNF FYAVDLNEEQ RLKNVFWVDA KGRLDYGNFS DVVFLDTAYI KNEYKLPFVP  360
FIGVNHHFQF ILLGCALLAD ESKSSYVWLI RAWLKAMGGR APRVILSSRD KVLKEVITEV  420
LPDSRHCFCL WHIFGKIPDK LGYVIRQHEK FMVKFNKCVF KSWTNEQFEK RWWKMVDRFN  480
LRDDXWFQSL YEDRGRWIPT YMXDTFLAGM STTQRLEGIN CFFDKFMQRK TPLKEFLEQY  540
KTILRERYEE EVKADFETXH KQPALRSPSP YGKQMATMYT HAVFKKFQVE VLGVVACHPK  600
KETEDGLIKT FRVQDFVESQ DFIVEWNEMT SDVSCLCRSF EFKGFLCRHV LIVLQMSGVH  660
SIPSQYILKR WTKDAKNRQT TREGSDAAES RVQRYNDLCR RAFKLSDEGS LSQESYSIAF  720
NALEEALRSC ESINNSIQNV TEPISPKTHX PQGSEGENQG NNNIETNKKN GASKKXQVHS  780
EPEAIXIGMQ EXWQQVAELT SRAPNFDGYY GSQQIVQGMA QLHFRPQPIP SYFDIQDGLQ  840
DVVKNMGMKQ HXAATEKSKI EGI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017180661.2	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A314XR15	0.0	A0A314XR15_PRUYE; Protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
STRING	XP_008346046.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000236134

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]