PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000235300
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 676aa    MW: 72385.6 Da    PI: 8.5339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000235300genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-0826631047
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
    MDP0000235300 26 RLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 63
                     689999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-62462IPR009057Homeodomain-like
CDDcd001673.16E-62464No hitNo description
PfamPF002491.7E-62463IPR001005SANT/Myb domain
SuperFamilySSF466896.58E-102569IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-112666IPR006447Myb domain, plants
Gene3DG3DSA:3.40.1390.101.9E-10214280IPR000713Mur ligase, N-terminal catalytic domain
SuperFamilySSF634181.06E-8215310IPR000713Mur ligase, N-terminal catalytic domain
HamapMF_0201927.655215668IPR005863UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
TIGRFAMsTIGR011432.5E-105239666IPR005863UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
Gene3DG3DSA:3.40.1190.107.5E-55295526IPR013221Mur ligase, central
SuperFamilySSF536231.83E-41315527IPR013221Mur ligase, central
PfamPF082456.8E-31318509IPR013221Mur ligase, central
Gene3DG3DSA:3.90.190.207.5E-36528668IPR004101Mur ligase, C-terminal
SuperFamilySSF532441.52E-30529667IPR004101Mur ligase, C-terminal
PfamPF028751.1E-9530595IPR004101Mur ligase, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0071555Biological Processcell wall organization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0047480Molecular FunctionUDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MCSVDLDVNS NCYHEHWFIY GSIELRLFLL GLEKYGKGDW RSISRNFVVT RTPTQVASHA  60
QKYFIRLNSM NKDRRRSSIH DITSVNNGEI SAAQGPITGQ ANGAAVGSSG KSPKQSPAGP  120
PGVGMYGAPS IGQPIGGPLV SAVGTPVNLP APPHMAYGVR APVPGGVVPG APMNMVPMTY  180
PMPHSSHRHS ISIATKXSIN PSSPNPPESE SKTLWTVSDI AAAVNGRXVK WGPPGTXSTD  240
TRTLXPNQWF FAIAGPNFDA HDFVXPELSR RGCAGVIGNR VCENWDRGFV ECHGNTVVSL  300
KKMASYARNR FHGEVVGVTG SVGKTSTKSM IALALESSTC LVHQSHGNWN NEIGVALSLI  360
GMPRNSGVVV LEMGMSGKGE ILELARTARP TVRLILNVGA SHFCNFSSLE EIAIAKGEIL  420
AEAKPGDVCV LNADDPLVMS LPVPYGVKKV LFGRRRTVGC HVRLVVSEST NRGLGVRVVL  480
QNHQEMVEFV IPSPGVHLGV NACAAAAVAT LLGXSLSQIG VRLSAFSPVH MRLELEIARN  540
GTKIVNDAYN ANPVSTKAAI DVLESIDCRG KRIAILGDML ELGGIEMESH EMILKQCRSA  600
RIDLVGLVGE RFCAAAASMK SLDEMNIXYA IDSEILAQEI VKMVNCNDVV LVKGSRGLQM  660
EKVVNAIKLM ESNNPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2am1_A1e-3924066832453UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl- D-alanine ligase, MurF protein
2am2_A1e-3924066832453UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl- D-alanine ligase, MurF protein
3zm5_A2e-3924066832453UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
3zm6_A2e-3924066832453UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367048.20.0uncharacterized protein LOC103430675
TrEMBLA0A498IAQ10.0A0A498IAQ1_MALDO; Uncharacterized protein
STRINGXP_008367048.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-58MYB family protein