PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000234814

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 899aa MW: 102645 Da PI: 8.1871

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000234814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.5e-20	68	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + it+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel MDP0000234814 68 EYYSEFAKRCGFSIRRHRTEGKvGVGKGITRRYFVCHRAGNTPIKNSSESKPQRNRKSSRCGCQAYMRISKTTelgALEWRVTGFANHHNHELX 161 69************998877567778***********99999999****************99887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-17	68	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-20	284	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	562	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	565	593	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-5	570	597	IPR006564	Zinc finger, PMZ-type
Pfam	PF08583	2.2E-13	813	882	IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MMSEDAGLRN DNIMLVVYDD ASDQRSLSLD DTSSTEESPD ETRLSLETTN DLTPYIGQRF 60 STHDAAYEYY SEFAKRCGFS IRRHRTEGKV GVGKGITRRY FVCHRAGNTP IKNSSESKPQ 120 RNRKSSRCGC QAYMRISKTT ELGALEWRVT GFANHHNHEL XEPNQVRFLP AYRTISESDK 180 SRILMFAKTG ISVQQMMRLM ELEKCVEPGC LPFTEKDVRN LLQSFRKLDP EEESIDLLRM 240 CRSIKEKDPN FKFEYTLDSN HRLENIAWSY ASSVQAYESF GDAVVFDTTH RLTAFDMPLG 300 IWVGINNYGM PCFFGCVLLR EESLRSFSWA LKAFLSFMYG KAPQTILTDQ NVFLKEAISM 360 EMPTAKHALC IWMIVAKFPS WFNAVLGERY NEWKSEFYRI YNLESIEDFE LGWRDLVNSF 420 GLHSNRHIVN LYGLRSLWAL PFLRSHFFAG MTAIGQSKSI NAFIQRFLSA QTRLAHFVEQ 480 VAVAVDFKDQ AGEQQTMQQN LQNICLKTGA PMESHAASIL TPHAFSKLQE QLVLAAHYAS 540 FQMEDGFLVR HHTKADGGRK VYWVPREGII SCSCHHFEFS GILCRHALRV LSTGNCFQIP 600 DRYIPARWRR ISMPSAKLLQ SSPNEHAERI QLLQNIVSTL VTESAKSRER LDIATEQVSI 660 LLSRIREEPV SLQNSVVQVL MDSDACQGLL KNVSRTGLEA TICIRGLEAG TPDETRLDWL 720 PTTGAPWRYL ELTITCSGAR QLKSGKRLVA RSDKSIYSLN AFFLCSRYRQ SVANLNPLVY 780 AKPEGGGPET DXRSSKSQVA VDFDSIGCYR LNMHPPLTLH KHPMCAQIIE EFQKCHVDHP 840 IAKFFGECTD LKIQLDRCFR QEKAVKRKAN FEESKKLKER LQTLRKETAE ITTESSVQA

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MMSEDAGLRN DNIMLVVYDD ASDQRSLSLD DTSSTEESPD ETRLSLETTN DLTPYIGQRF  60
STHDAAYEYY SEFAKRCGFS IRRHRTEGKV GVGKGITRRY FVCHRAGNTP IKNSSESKPQ  120
RNRKSSRCGC QAYMRISKTT ELGALEWRVT GFANHHNHEL XEPNQVRFLP AYRTISESDK  180
SRILMFAKTG ISVQQMMRLM ELEKCVEPGC LPFTEKDVRN LLQSFRKLDP EEESIDLLRM  240
CRSIKEKDPN FKFEYTLDSN HRLENIAWSY ASSVQAYESF GDAVVFDTTH RLTAFDMPLG  300
IWVGINNYGM PCFFGCVLLR EESLRSFSWA LKAFLSFMYG KAPQTILTDQ NVFLKEAISM  360
EMPTAKHALC IWMIVAKFPS WFNAVLGERY NEWKSEFYRI YNLESIEDFE LGWRDLVNSF  420
GLHSNRHIVN LYGLRSLWAL PFLRSHFFAG MTAIGQSKSI NAFIQRFLSA QTRLAHFVEQ  480
VAVAVDFKDQ AGEQQTMQQN LQNICLKTGA PMESHAASIL TPHAFSKLQE QLVLAAHYAS  540
FQMEDGFLVR HHTKADGGRK VYWVPREGII SCSCHHFEFS GILCRHALRV LSTGNCFQIP  600
DRYIPARWRR ISMPSAKLLQ SSPNEHAERI QLLQNIVSTL VTESAKSRER LDIATEQVSI  660
LLSRIREEPV SLQNSVVQVL MDSDACQGLL KNVSRTGLEA TICIRGLEAG TPDETRLDWL  720
PTTGAPWRYL ELTITCSGAR QLKSGKRLVA RSDKSIYSLN AFFLCSRYRQ SVANLNPLVY  780
AKPEGGGPET DXRSSKSQVA VDFDSIGCYR LNMHPPLTLH KHPMCAQIIE EFQKCHVDHP  840
IAKFFGECTD LKIQLDRCFR QEKAVKRKAN FEESKKLKER LQTLRKETAE ITTESSVQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	865	877	KRKANFEESKKLK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381369.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_008381370.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_008381371.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A251RL31	0.0	A0A251RL31_PRUPE; Uncharacterized protein
STRING	XP_008381369.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	MDP0000234814

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]