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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000232760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | BES1 | ||||||||
Protein Properties | Length: 894aa MW: 100318 Da PI: 6.4463 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 137.9 | 1e-42 | 80 | 223 | 1 | 139 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.....eeaeaagssasaspe 91 gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ ++a ++ ss+ +sp+ MDP0000232760 80 GGARRCRPIEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGArlagvNSAPVTSSSQMVSPH 175 6899*****************************************************************954444334564555555566669999 PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpv 139 ++ +++ +s+ +sp e ++ k + ps s +d s+a ++s++ v MDP0000232760 176 TPASLKGGTSSYQSPGELNACNIKGVYLPSLSPYDLPSSARSQSSSLV 223 999999999**************************9988766555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.5E-37 | 82 | 201 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 6.43E-178 | 260 | 700 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.2E-196 | 262 | 705 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 4.7E-102 | 269 | 689 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 300 | 314 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 321 | 339 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 343 | 364 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 347 | 355 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 7.4E-7 | 426 | 435 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 5.4E-65 | 436 | 458 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 509 | 528 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 543 | 559 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 560 | 571 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.4E-65 | 578 | 601 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.4E-7 | 581 | 591 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 5.4E-65 | 618 | 640 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.4E-7 | 669 | 683 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 7.4E-7 | 684 | 698 | IPR001371 | Glycoside hydrolase, family 14B, plant |
SuperFamily | SSF117281 | 3.27E-7 | 798 | 861 | No hit | No description |
Gene3D | G3DSA:2.120.10.80 | 1.5E-6 | 799 | 862 | IPR015915 | Kelch-type beta propeller |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MASGLQKLIT SEEDDDEEME MDVKEEDDGD EEDDEDGEKH VDAAQMMVGV DGEMPTRSNN 60 NNRFQQHHQF QEQVGTPGGG GARRCRPIEE KERTKLRERQ RRAITARILA GLRRHGNYNL 120 RVRADINDVI AALAREAGWV VLPDGTTFPS KSQGARLAGV NSAPVTSSSQ MVSPHTPASL 180 KGGTSSYQSP GELNACNIKG VYLPSLSPYD LPSSARSQSS SLVGEGACQT ESHPLIGGSM 240 DNIGDKQIVD IPLKLQERDF SSTANIPVYI MLPLGVINMK CELVDPDGLL KQLRVLKSVN 300 VDGVMVDCWW GIVEGHAPQE YNWNGYRRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP 360 LPHWVAEIGR SNPDIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD CMRSFRVEFD 420 EYFKDGNISM IQVGLGPCGE LRYPSCPVKH GWRYPGVGEF QCYDQYLLKS LRKAAEAKGH 480 SFWGRGPXNA GSYNSRPNET SFFSEGGDYD GYYGRFFLNW YSRVLVDHGD RVLSLAKLAF 540 DGTCIAAKLS GLHXWYKTAS HAAELTAGFY NSCNRDGYAP IMTMLKKHEA TVKLACTELH 600 VLDQHEEFQE ALGDSEGLFW QVLNAAWDVC VPVSSENALA CHDRISYNKI LDNSKPLTDP 660 DGRHLSSFTY LRLSPLLMER QNFMEFERFV RRMHAIDVLQ TIFPTRQSYY FLNTMSPDSS 720 TSKSRPAKSS HLSLLFFNDV LQGVHTLLLW LRTRDSFRSI LCFARTSIIL SQPLPDLKPQ 780 WNLIILPQVQ QKTYCVHGLP PRIMKRKGMG FEVPGKKVYL LGGCGWCEDA TDEVYSYDAS 840 LNAWGEASPL STARFTLTCA VTAHVHAVVY EPSMGHGSTR NLTWFRAGEV QQLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wds_A | 1e-142 | 266 | 695 | 12 | 443 | Beta-amylase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14909 | 1e-163 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008338860.2 | 0.0 | beta-amylase 7 isoform X1 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A498JEY7 | 0.0 | A0A498JEY7_MALDO; Beta-amylase | ||||
STRING | XP_008338860.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10883 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000232760 |
Publications ? help Back to Top | |||
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