PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229755
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 321aa    MW: 35508.2 Da    PI: 10.6
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229755genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.9e-141632031151
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    v+ s  ++g++KK +ELSvLCda + ++ifsst k++ y++
  MDP0000229755 163 VSTSSYLAGLIKKTHELSVLCDAXIXLVIFSSTXKMFRYCN 203
                    67777799******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1035065.49E-6661IPR023395Mitochondrial carrier domain
PfamPF001532.4E-7763IPR018108Mitochondrial substrate/solute carrier
Gene3DG3DSA:1.50.40.106.0E-8863IPR023395Mitochondrial carrier domain
PROSITE profilePS5006614.633145205IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-5146204IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-9167182IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-11169205IPR002100Transcription factor, MADS-box
PfamPF003194.3E-10170201IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-9182203IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.9701.2E-10220265IPR029061Thiamin diphosphate-binding fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSDALINGLV GAGGGIIAQL ITYPLHTVNA RQQTDRDRKK EKKKLGTVEQ ICQVIKNXGW  60
ERFSSAASLQ LXXPSHGGQG HALLSSTKST LFARAPLNFS FSTFGKEIVL SEKPRGVCSE  120
AVGVGGGHEN QKRQLQPWRL SQHSLGTNKK REVVMSSLHK SLVSTSSYLA GLIKKTHELS  180
VLCDAXIXLV IFSSTXKMFR YCNATNAIHA TVAGPTSHLQ LIAEPGLNLL GCCNELNAXY  240
AAKGYGRARR IGENVVAFTV GRLKCAERDR RCVQRELAXH LHNRWDELQR LRHEPNPSPH  300
DRVXRFHSRA SVLPNRHLSP X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644DRKKEKKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.30511e-82bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-09MIKC_MADS family protein