PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 358aa MW: 39943.9 Da PI: 9.3459

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000229742	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	104.7	4.8e-33	106	206	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k ltpsdv+k++rlv+pk++ae++ +g+ ++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ + ++ +l MDP0000229742 106 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgSGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLNAGDVVLFERRRANTDRL 199 99************************86445..6779*********************************************87779999 PP EEEEE-S CS B3 93 vvkvfrk 99 ++++r+ MDP0000229742 200 SIGWRRR 206 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-41	96	209	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-31	101	205	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.75E-31	104	196	No hit	No description
PROSITE profile	PS50863	14.847	106	207	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-27	106	207	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-30	106	207	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MLILTPTDKK TPSRHPHSRT HFIPQFYQDT HHHSHAHHSF QPWQLNSQDP TTPMSPTHFH 60 TPTATLNFNL NHHDAVDPNE SGQLQSPPPH HRVNSDDSDD EKEPMFEKPL TPSDVGKLNR 120 LVIPKQHAEK YFPLGSGDSG LLLSFEDESG KSWRFRYSYW NSSQSYVLTK GWSRYVKEKR 180 LNAGDVVLFE RRRANTDRLS IGWRRRNAVP AHDSGAGGVE SSSGGVGGNS SGGGGGWTRM 240 FYSAPHHGSS YPAHQYHHSV APYPPDCLHA AGSRVQNMNP TASVGNSKIL RLFGVNLECQ 300 QQAAEHLESE PSTSDGSSST LSMSSQGPTH GQRQRYPRAA YNYADQHRVR KPPKLSLP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MLILTPTDKK TPSRHPHSRT HFIPQFYQDT HHHSHAHHSF QPWQLNSQDP TTPMSPTHFH  60
TPTATLNFNL NHHDAVDPNE SGQLQSPPPH HRVNSDDSDD EKEPMFEKPL TPSDVGKLNR  120
LVIPKQHAEK YFPLGSGDSG LLLSFEDESG KSWRFRYSYW NSSQSYVLTK GWSRYVKEKR  180
LNAGDVVLFE RRRANTDRLS IGWRRRNAVP AHDSGAGGVE SSSGGVGGNS SGGGGGWTRM  240
FYSAPHHGSS YPAHQYHHSV APYPPDCLHA AGSRVQNMNP TASVGNSKIL RLFGVNLECQ  300
QQAAEHLESE PSTSDGSSST LSMSSQGPTH GQRQRYPRAA YNYADQHRVR KPPKLSLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-46	101	209	3	116	B3 domain-containing transcription factor NGA1
5os9_B	2e-46	101	209	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	3e-43	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280938.1	0.0	B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	1e-62	Y2608_ARATH; B3 domain-containing protein At2g36080
Swissprot	Q9FNI3	3e-62	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	D9ZIL2	0.0	D9ZIL2_MALDO; ABI3L domain class transcription factor
STRING	XP_008359499.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	1e-55	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000229742

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]