PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229007
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 325aa    MW: 36289.4 Da    PI: 6.655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229007genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13116167155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N  ++ Lr+++P +   ++++ + a+i   A++++k+L+
  MDP0000229007 116 QRMTHIAVERNRRKQMNVYLAALRSMMPAP---YAQRGDQASIIGGAINFVKELE 167
                    79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-11114171No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12115171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-15115188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.888115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTLEAVVFQE EQYSXGWKDS QAIGGGGGGG GSWSHGFDFG EEDHQEESNK VGQQGFNMSL  60
DSSPSSMVQS VNDFDKNNGS AFNHVFPSIE ALAATTGRKK RKRIRSIKNK EFMETQRMTH  120
IAVERNRRKQ MNVYLAALRS MMPAPYAQRG DQASIIGGAI NFVKELEQLL QSIEGQRRTN  180
QQSDHHLNFA SIFSSFFAFP QYSNCSTNHG HGLYNNSSIE LSNELTAEKR SSAIADVEVS  240
MAESHANIKV LVKKQPRQLL NMVLGLHSLR FMILHLNVTT VDSMILYSFS VKIEDNSQLT  300
SVNEIAADVY EMVGRIQEEA QHLAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102RKKRKR
2116127RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965082.10.0transcription factor bHLH94-like
TrEMBLA0A498KK450.0A0A498KK45_MALDO; Uncharacterized protein
STRINGXP_009365813.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-63bHLH family protein