PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228942
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 107aa    MW: 12032.1 Da    PI: 11.3909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228942genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.4e-2855104251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev +i+fs tg+ly+y+s
  MDP0000228942  55 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIVFSGTGRLYDYAS 104
                    8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.51146106IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-3846105IPR002100Transcription factor, MADS-box
CDDcd002658.05E-3847107No hitNo description
SuperFamilySSF554551.44E-2747107IPR002100Transcription factor, MADS-box
PROSITE patternPS00350048102IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-294868IPR002100Transcription factor, MADS-box
PfamPF003192.4E-2555102IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-296883IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-2983104IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MRIEKAKPQF PERKRAPFGF PNKTCQSSIR LRLSSIRLPG PLEEGMGRGK IVIRRIDNST  60
SRQVTFSKRR SGLLKKAKEL SILCDAEVGL IVFSGTGRLY DYASTSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-2146107162MEF2C
5f28_B7e-2146107162MEF2C
5f28_C7e-2146107162MEF2C
5f28_D7e-2146107162MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots, mostly in lateral roots (LR) primordia, young emerging LRs, apex and base of LRs, apex of the primary root, and in the stele. Barely detectable in shoots. {ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640221e-79KP164022.1 Pyrus pyrifolia clone PpAGL17 AGL17-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166977.11e-35MADS-box transcription factor ANR1-like isoform X6
RefseqXP_028959464.12e-35MADS-box transcription factor 23-like
SwissprotQ9SI382e-33ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A068TMB16e-34A0A068TMB1_COFCA; Uncharacterized protein
TrEMBLA0A251MUM33e-33A0A251MUM3_PRUPE; Uncharacterized protein
TrEMBLA0A2I0A9Y47e-34A0A2I0A9Y4_9ASPA; MADS-box transcription factor 27
TrEMBLA0A498K3V75e-34A0A498K3V7_MALDO; Uncharacterized protein
STRINGXP_004289825.13e-34(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.15e-36AGAMOUS-like 44
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Yan Y,Wang H,Hamera S,Chen X,Fang R
    miR444a has multiple functions in the rice nitrate-signaling pathway.
    Plant J., 2014. 78(1): p. 44-55
    [PMID:24460537]
  3. Lei L, et al.
    Nitrogen use efficiency is regulated by interacting proteins relevant to development in wheat.
    Plant Biotechnol. J., 2018. 16(6): p. 1214-1226
    [PMID:29193541]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]