PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228930
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 331aa    MW: 37182.8 Da    PI: 8.1131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228930genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd  lv++++++G+g+W+  ++  g++R++k+c++rw  yl
    MDP0000228930 14 KGPWTTEEDAMLVNYIQKHGPGNWRNLPKNAGLRRCGKSCRLRWTAYL 61
                     79******************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21562IPR009057Homeodomain-like
PROSITE profilePS5129424.22965IPR017930Myb domain
SuperFamilySSF466893.5E-2111105IPR009057Homeodomain-like
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
PfamPF002495.2E-151461IPR001005SANT/Myb domain
CDDcd001671.36E-101661No hitNo description
PROSITE profilePS500905.34363109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-863113IPR009057Homeodomain-like
SMARTSM007179.164111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRRAPCCDKN GLKKGPWTTE EDAMLVNYIQ KHGPGNWRNL PKNAGLRRCG KSCRLRWTAY  60
LRRFSFEEEE TIIQLHSILG NKWAAPSAHD IKNYWNTHND IKNYWNAHIR KRLLRMGIDP  120
VTHALRIDLL DLSSILSSYV CNNPAAALLN LSNLLKSTQQ QQTLVNPELL RLATSLLSIK  180
QENPELCFEG GHLMMLTVFP APKDCALASF KTKFSATPSV DELDESEKSV AHTASLHTAP  240
CVDLLLKKHE RTDGASVLFG VKLRTSTPLV YDLGPEKSTG CIEVFLAHKD CALALLRGEL  300
GATLLEELEE SEKSALQTQI KIVLQDDRTD R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-151211325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353208.11e-100PREDICTED: protein ODORANT1-like
SwissprotQ9LDR82e-79MY102_ARATH; Transcription factor MYB102
TrEMBLA0A498HAT26e-90A0A498HAT2_MALDO; Uncharacterized protein
STRINGXP_008357910.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.18e-67MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]