PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000228328

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 222aa MW: 24930.2 Da PI: 9.7346

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000228328	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.3e-33	143	201	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg+Hnh+ MDP0000228328 143 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGTHNHP 201 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.3E-34	129	201	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-28	135	202	IPR003657	WRKY domain
PROSITE profile	PS50811	29.092	138	203	IPR003657	WRKY domain
SMART	SM00774	5.1E-38	143	202	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	144	201	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEDHHQQHNS PPLTSQLPPL SLPFLLPPPS QNPPLPPPYL FTSSSSSSLM TNPPDLLDTD 60 WFSLLSGGTQ AAGWLSHDQI NNSFKPMAMV DKNISGSAGN IISEAADQEE KVGIKRKAGG 120 RMRKAAASRP RFAFQTRSTD DILDDGYRWR KYGQKAVKNS SYPRSYYRCT HHTCNVKKQV 180 QRLSKDTSIV VTTYEGTHNH PCEKLMETLA PLLKQMQFLS RF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-25	133	200	7	74	Probable WRKY transcription factor 4
2lex_A	8e-25	133	200	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009338781.1	1e-134	PREDICTED: probable WRKY transcription factor 24
Refseq	XP_009350324.1	1e-134	PREDICTED: probable WRKY transcription factor 24
TrEMBL	A0A498JCT0	1e-166	A0A498JCT0_MALDO; Uncharacterized protein
STRING	XP_009338781.1	1e-134	(Pyrus x bretschneideri)
STRING	XP_009350324.1	1e-134	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-55	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	MDP0000228328