PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000225299

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 440aa MW: 49280.6 Da PI: 6.6326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000225299	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.5	8.7e-07	380	421	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR ri +++ +L+el P+ +k + ae L +Av +Ik+Lq MDP0000225299 380 QMRRTRISERMKKLQELFPNM----DKQTNTAEXLDLAVGFIKDLQ 421 57****************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.41	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-10	380	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.61E-5	382	424	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-9	383	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MSGLLYKYNP NFKASEGEPR KNHAAEFMDS NIFHQQHPAA ELRLNAMDNN GGGTQDLXYL 60 QPSSPEVETV LARFISSCNE PDXRDNGVQQ HQFEIQERPV NVKGXAXDSV SEHINGYXNS 120 THXMYQAPQG QQAHGLDSSS FAXVNXTGME NSMMQLKIGV GNRSNHVRQS SSPAGVFPNS 180 TVDDGFNVMK DSAGYRAGNG TNGEASXSTS RFGNQLSFSS RQSSYSGRMP RIAEDENGNL 240 GEGSQSQPDH SLGNANGSNS PYQSSFPDDS LDDSSFNDLK RARDNDGNKF STSTAFESXN 300 NDFRHRNLGL TQHLRFPNHX EMPAMEKYLQ FEDSIPRKIR AKRGFATHPR SIAERDSVAE 360 LHVTIARLYX IRDREYCEFQ MRRTRISERM KKLQELFPNM DKQTNTAEXL DLAVGFIKDL 420 QKQVXTLKDT KAKCSCSSEQ

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MSGLLYKYNP NFKASEGEPR KNHAAEFMDS NIFHQQHPAA ELRLNAMDNN GGGTQDLXYL  60
QPSSPEVETV LARFISSCNE PDXRDNGVQQ HQFEIQERPV NVKGXAXDSV SEHINGYXNS  120
THXMYQAPQG QQAHGLDSSS FAXVNXTGME NSMMQLKIGV GNRSNHVRQS SSPAGVFPNS  180
TVDDGFNVMK DSAGYRAGNG TNGEASXSTS RFGNQLSFSS RQSSYSGRMP RIAEDENGNL  240
GEGSQSQPDH SLGNANGSNS PYQSSFPDDS LDDSSFNDLK RARDNDGNKF STSTAFESXN  300
NDFRHRNLGL TQHLRFPNHX EMPAMEKYLQ FEDSIPRKIR AKRGFATHPR SIAERDSVAE  360
LHVTIARLYX IRDREYCEFQ MRRTRISERM KKLQELFPNM DKQTNTAEXL DLAVGFIKDL  420
QKQVXTLKDT KAKCSCSSEQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22205	2e-94	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028952741.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A498KI66	0.0	A0A498KI66_MALDO; Uncharacterized protein
STRING	XP_008350818.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000225299