PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224302
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 180aa    MW: 19746.3 Da    PI: 10.0758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224302genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1398143454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  MDP0000224302  98 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYINEL 143
                    799***********************6.....4****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1892157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-1492147No hitNo description
PROSITE profilePS5088816.86394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1698155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1098143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSKSLFGSKN NNSVSKQLCS SREDHVLVPL LERGMFSGAE QIEWTTQGGT KEVDPVTIGG  60
SSSDSVGNFT SENMENIRLK KRGRSSNSET GRSETPINHV EAERQRREKL NHRFYALRSV  120
VPNVSRMDKA SLLSDAVAYI NELKARVVQL EAKIQAQPGK PVVDIGGQTT CSKATAIIKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-2891153263Transcription factor MYC2
5gnj_B1e-2891153263Transcription factor MYC2
5gnj_E1e-2891153263Transcription factor MYC2
5gnj_F1e-2891153263Transcription factor MYC2
5gnj_G1e-2891153263Transcription factor MYC2
5gnj_I1e-2891153263Transcription factor MYC2
5gnj_M1e-2891153263Transcription factor MYC2
5gnj_N1e-2891153263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884LKKRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257384e-87leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360190.11e-108PREDICTED: transcription factor MYC2-like
TrEMBLA0A498JIU61e-120A0A498JIU6_MALDO; Uncharacterized protein
STRINGXP_008372794.11e-131(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.19e-30bHLH family protein