PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223137
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 314aa    MW: 35817.8 Da    PI: 8.7317
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223137genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.8e-113179155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s+ykGV    ++grW A+I++      + r++lg+f  +eeAak ++ a +k++g
  MDP0000223137 31 SRYKGVV-PQSNGRWGAQIYEK-----SNRVWLGTFYDEEEAAKTYDIASLKIRG 79
                   78****7.7779*********4.....6***********************9997 PP
2B390.11.7e-28168271199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    f+kv tpsdv++++r+v+pk++ae+h       g     +++ l++ede g+ W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++  +
  MDP0000223137 168 FEKVATPSDVGRLNRMVIPKRYAEKHfqvhqsvG---FgKGVLLKFEDEVGKLWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKVGDVVRFERSVGE 260
                    89************************77665442...04789*************************************************88669 PP

                    EE..EEEEE-S CS
             B3  89 efelvvkvfrk 99 
                    +++l++  +++
  MDP0000223137 261 DKKLFIDCRSR 271
                    99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-53179IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-133184IPR016177DNA-binding domain
CDDcd000181.16E-193184No hitNo description
Gene3DG3DSA:3.30.730.104.9E-153284IPR001471AP2/ERF domain
PROSITE profilePS5103217.573287IPR001471AP2/ERF domain
SMARTSM003807.9E-163291IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-34161272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-28165270IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-27167266No hitNo description
PfamPF023624.2E-26168271IPR003340B3 DNA binding domain
SMARTSM010199.9E-21168272IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747168272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDLISCWNAS TRDYSTMNQA NGASSNKLPS SRYKGVVPQS NGRWGAQIYE KSNRVWLGTF  60
YDEEEAAKTY DIASLKIRGL DAITQISRNQ MKPYECDVTE ALFLESHSKA EIVDMLRKHS  120
YANELEMYKH KLYNGCAACA LGLDDGGKRM KCYHDFMDTC SRERELLFEK VATPSDVGRL  180
NRMVIPKRYA EKHFQVHQSV GFGKGVLLKF EDEVGKLWRF GYCYWSSSQS YVLSKGWIRF  240
VKEKKLKVGD VVRFERSVGE DKKLFIDCRS RNLDISGIGE IHGTVGDPPA TVQDDGVVRL  300
FGVNISRKPV HCRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4316527711126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379886.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-91RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A498J5530.0A0A498J553_MALDO; Uncharacterized protein
STRINGXP_008379886.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-94related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]