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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000223137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | RAV | ||||||||
Protein Properties | Length: 314aa MW: 35817.8 Da PI: 8.7317 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.3 | 2.8e-11 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV ++grW A+I++ + r++lg+f +eeAak ++ a +k++g MDP0000223137 31 SRYKGVV-PQSNGRWGAQIYEK-----SNRVWLGTFYDEEEAAKTYDIASLKIRG 79 78****7.7779*********4.....6***********************9997 PP | |||||||
2 | B3 | 90.1 | 1.7e-28 | 168 | 271 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g+ W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++ + MDP0000223137 168 FEKVATPSDVGRLNRMVIPKRYAEKHfqvhqsvG---FgKGVLLKFEDEVGKLWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKVGDVVRFERSVGE 260 89************************77665442...04789*************************************************88669 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ +++ MDP0000223137 261 DKKLFIDCRSR 271 99999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-5 | 31 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-13 | 31 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-19 | 31 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-15 | 32 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.57 | 32 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-16 | 32 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-34 | 161 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-28 | 165 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.68E-27 | 167 | 266 | No hit | No description |
Pfam | PF02362 | 4.2E-26 | 168 | 271 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-21 | 168 | 272 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.747 | 168 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDLISCWNAS TRDYSTMNQA NGASSNKLPS SRYKGVVPQS NGRWGAQIYE KSNRVWLGTF 60 YDEEEAAKTY DIASLKIRGL DAITQISRNQ MKPYECDVTE ALFLESHSKA EIVDMLRKHS 120 YANELEMYKH KLYNGCAACA LGLDDGGKRM KCYHDFMDTC SRERELLFEK VATPSDVGRL 180 NRMVIPKRYA EKHFQVHQSV GFGKGVLLKF EDEVGKLWRF GYCYWSSSQS YVLSKGWIRF 240 VKEKKLKVGD VVRFERSVGE DKKLFIDCRS RNLDISGIGE IHGTVGDPPA TVQDDGVVRL 300 FGVNISRKPV HCRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-43 | 165 | 277 | 11 | 126 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008379886.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | P82280 | 1e-91 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A498J553 | 0.0 | A0A498J553_MALDO; Uncharacterized protein | ||||
STRING | XP_008379886.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-94 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000223137 |