PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000222760

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 196aa MW: 21046.6 Da PI: 6.0021

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000222760	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	122.1	2.4e-38	40	121	2	83
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 r qd+++P anv+rim++vlP +aki+++aketvqecvse+i+f+t+ea++++qre+rkt++++d++wa+++lGfe+ + MDP0000222760 40 RVQDQYMPTANVVRIMRRVLPPHAKITEAAKETVQECVSEYIAFITAEANQRSQREQRKTVSAEDIIWAMSKLGFEKSTPST 121 779*************************************************************************876555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.52E-26	14	114	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-35	35	126	IPR009072	Histone-fold
Pfam	PF00808	1.2E-21	45	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.4E-8	73	91	No hit	No description
PRINTS	PR00615	1.4E-8	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MQKSNYSGDG YAVGNTSHPA NTTGSTGNNT AQSTHRRFVR VQDQYMPTAN VVRIMRRVLP 60 PHAKITEAAK ETVQECVSEY IAFITAEANQ RSQREQRKTV SAEDIIWAMS KLGFEKSTPS 120 TEHPLMDYGP AVPSGPAGPQ VAMMPPPLLP PFVPEFPLGF EQHGPPMLDS SMIEMFLDGG 180 SSTGAGEGGS SSSFGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	8e-40	39	115	6	82	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018507083.1	1e-107	PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBL	A0A498KCM9	2e-92	A0A498KCM9_MALDO; Uncharacterized protein
STRING	XP_009375082.1	1e-107	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-40	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	MDP0000222760