PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000221801
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 234aa    MW: 27007.7 Da    PI: 4.9052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000221801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-131562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l  +v++ G+++W++ a++ g++R++ +c+ rw++yl
    MDP0000221801 15 KGPWLEEEDERLTTVVNLKGNRRWDAXAKESGLRRSGRSCRMRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding29.91.3e-09871112248
                      T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                      g W++Iar ++ gRt++++k++w+++l
    MDP0000221801  87 G-WSKIARALP-GRTDNEIKNYWRTHL 111
                      3.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2391066IPR017930Myb domain
SMARTSM007172.9E-101464IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-2015112IPR009057Homeodomain-like
PfamPF002496.7E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-171669IPR009057Homeodomain-like
CDDcd001671.89E-71762No hitNo description
SMARTSM007171.4E-567113IPR001005SANT/Myb domain
PROSITE profilePS5129411.80667115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-1670114IPR009057Homeodomain-like
CDDcd001673.27E-675111No hitNo description
PfamPF002492.3E-776111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMTCQAAMDG EKLRKGPWLE EEDERLTTVV NLKGNRRWDA XAKESGLRRS GRSCRMRWLN  60
YLRPNIKHGQ ITIIEEKTIL QTSSTLGWSK IARALPGRTD NEIKNYWRTH LKKKTQIPDG  120
NFQCTLNKNG RGLFCQEGDM NNEKYDFDQD HDSVKNSWET KVTSSDDLGL SDFAVTNSPY  180
ETQLSDWISE LSSEQNGTAY NQDCNSVESD LCHLTWTPDD SDTWDCPSFL WDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-20131152105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-20511549159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-20511549159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-20131152105C-Myb DNA-Binding Domain
1msf_C1e-20131152105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387530.21e-162transcription factor MYB27-like
TrEMBLA0A498IHT61e-158A0A498IHT6_MALDO; Uncharacterized protein
STRINGXP_008350343.11e-162(Malus domestica)
STRINGXP_008387530.11e-162(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-52myb domain protein 27