PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000221444

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 473aa MW: 51372.8 Da PI: 8.2633

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000221444	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	254	314	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWt+GG+lrnvPvGgg+rkn k+s MDP0000221444 254 QTEPLHCPRCDSDNTKFCYYNNYNLAQPRHFCKSCRRYWTHGGTLRNVPVGGGSRKNTKRS 314 57889****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	251	312	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-33	257	312	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	258	312	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	260	296	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MALYVYVIIR LSQSLSLSHL TGAAHLTHSH SHSLSQSPRS TPPSNPRRSS SSITPLTHAA 60 PLLRRLQPDR TSLEQRNPCR ENEKEIISLL LQRSLIVEKE VLGFTAEGPK IRIRAFVEGG 120 AGICCGANRG AVARKDLVFE PLSEDSHRLW CQKLGDYIDS LGIEEELGPI HFRPRAKLMT 180 RTSRPTCHSR HLLHSSIKPS SLLPKYLPPL SAQIPPYFLQ TTTLTMPFDS ADALMQPSMT 240 TRVQHSLGHP PPQQTEPLHC PRCDSDNTKF CYYNNYNLAQ PRHFCKSCRR YWTHGGTLRN 300 VPVGGGSRKN TKRSRPSCSS SSGSPSSSSL TQEVSSVAPD KPNSFPVEPK PETATDHEKL 360 MDLNESAVGN GGFTSLLSAQ GPPASGFMAF SGFGYGLGLG QGFDEVGTFG YDGGRGVLAY 420 PDVGDFTNVI HNNGAVSGGS VGCNTWQIMT GGDGGIAENN GDCFAWPELE TSK

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MALYVYVIIR LSQSLSLSHL TGAAHLTHSH SHSLSQSPRS TPPSNPRRSS SSITPLTHAA  60
PLLRRLQPDR TSLEQRNPCR ENEKEIISLL LQRSLIVEKE VLGFTAEGPK IRIRAFVEGG  120
AGICCGANRG AVARKDLVFE PLSEDSHRLW CQKLGDYIDS LGIEEELGPI HFRPRAKLMT  180
RTSRPTCHSR HLLHSSIKPS SLLPKYLPPL SAQIPPYFLQ TTTLTMPFDS ADALMQPSMT  240
TRVQHSLGHP PPQQTEPLHC PRCDSDNTKF CYYNNYNLAQ PRHFCKSCRR YWTHGGTLRN  300
VPVGGGSRKN TKRSRPSCSS SSGSPSSSSL TQEVSSVAPD KPNSFPVEPK PETATDHEKL  360
MDLNESAVGN GGFTSLLSAQ GPPASGFMAF SGFGYGLGLG QGFDEVGTFG YDGGRGVLAY  420
PDVGDFTNVI HNNGAVSGGS VGCNTWQIMT GGDGGIAENN GDCFAWPELE TSK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.28845	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857251	6e-33	DQ857251.1 Glycine max Dof2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001287799.1	0.0	dof zinc finger protein DOF3.1
TrEMBL	D9ZIY4	0.0	D9ZIY4_MALDO; DOF domain class transcription factor
STRING	XP_008378485.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000221444