PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000219043
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 1152aa    MW: 128969 Da    PI: 6.5825
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000219043genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-191.39e-2916625652117
           CG-1  52 kDGyswkkkkdgktvrEdhekLKvgg.........................vevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                    k G++w+kkkdg+tv E+he+LK  +                         ve+l+cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy+e+
  MDP0000219043 166 KTGHQWRKKKDGRTVGEAHERLKRSNgnsflvcktsclillclycctkvgnVETLNCYYAHGEDNPSFQRRSYWMLDPAYEHIVLVHYRET 256
                    78*********************9999**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143755.852127262IPR005559CG-1 DNA-binding domain
SMARTSM010763.1E-41130257IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-8133199IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-15213255IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-9586673IPR013783Immunoglobulin-like fold
CDDcd001026.12E-5589673No hitNo description
SuperFamilySSF812965.88E-19589673IPR014756Immunoglobulin E-set
PfamPF018331.0E-8589672IPR002909IPT domain
SuperFamilySSF484032.49E-14772878IPR020683Ankyrin repeat-containing domain
CDDcd002049.57E-11775875No hitNo description
Gene3DG3DSA:1.25.40.205.7E-14782878IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.477784876IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.045817849IPR002110Ankyrin repeat
SMARTSM0001564934956IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-79781041IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.69891011IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.6829901019IPR000048IQ motif, EF-hand binding site
PfamPF006120.00399921010IPR000048IQ motif, EF-hand binding site
SMARTSM000158.0E-510121034IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.24910131037IPR000048IQ motif, EF-hand binding site
PfamPF006127.6E-510151034IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1152 aa     Download sequence    Send to blast
MKSVKLPTLN QSINQSINHH FHIAYNLXPA HQDTMLPSHR AQEIIRSCLR FTCTLCPLYR  60
PSWSLWSCCL CRLFSFQAFT HYKAKGTLLT CDPVHDRDSG LSAPELXLLN LLXRPPPLST  120
MQSGYNINDL FQEAQTRWLK PAEVLFILQN HEKYKIAPEP PQQPSKTGHQ WRKKKDGRTV  180
GEAHERLKRS NGNSFLVCKT SCLILLCLYC CTKVGNVETL NCYYAHGEDN PSFQRRSYWM  240
LDPAYEHIVL VHYRETNEVS VQNLIXNQAY LTTPFHMNSL SLPLLAPPLP HWVVXXFLYN  300
DAFQGKPSTG SFVQSPVSSS FSHSPSSNST PPGSISIVSD LREPNQNLSS PGSLEVSSDI  360
VNKNGRGNPE NLYGTGELDS LTKFDVNQAL RQLEEQLSLN EDSFKGFMDD SPNASDILDY  420
TDITNKDQFA AFNEPGYVVH DQFYSEPARM QGNADYSGEH CKIIDHEFRD GNKESATWKE  480
FLDPRKNSSV LKSAEKSLYT LDRNENSLSS LRSGPTEVQE HHQWLNSNEN IVDNDSLPLP  540
LEVDRSKLYP YDFVSGTHPD YYTQLFEQGQ IGSVDSDISL TVAQNQKFTI REISPEWGYA  600
TEATKVVIIG SFLCDPSESA WTCMFGDVEV PAQIIQEGVI RCEAPPHLPR KVTVCLTAGN  660
RVSCSEVREF EYRVKSCSCS HXNSPPQEAA ESAEELLLLV RFVQLLMDDS STQERDSVGS  720
DSLRKLKADX DSWSSIIEAL LLGSGSSSST IYWLLEELLK DKLQQWLSSR SHEFDQNGCS  780
LSKKEQGIIH MVAGLGXAWA LNPILNCGVN INFRDINGWT ALHWTARFGR EKMAAVLLAS  840
GASAGAVTDP SSQDPVGKTA ASIAATIGHK GLAGYLSELS LTSHLSSLTL EESEFSKGSA  900
EVEAELTVNS VSNRSLEGSE DQVSLKNTLA AVRNAAQAAA RIQSAFRARS FRKRQHKEAG  960
VSIDDYGISS RDIQGLSALS RLTFRNPRDY NSAAISIQKK YRGYKGRKDF LTLRQKVVKI  1020
QAYVRGYQVR KHYKVICWAV GILDKVVLRW RRKGXGLRGF RQETKXKESE DEDILKVFRE  1080
QKVNVAIDEA VSRVLSMVES PEARQQYHRM LTRYHQAKAE LGGTSGEGAE ADAPNSGGDN  1140
VIVDDTDMYL FT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951277.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A498HRX90.0A0A498HRX9_MALDO; Uncharacterized protein
STRINGXP_009372261.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-174Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]