PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218785
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 92aa    MW: 10468.5 Da    PI: 6.9573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218785genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-0918581454
                   HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   d+i++ +++L+ llP++ + ++  +s ++iLe+++ YIk L
  MDP0000218785 18 DEIKELISKLQPLLPQLHHXRNAPVSASSILEETCSYIKRL 58
                   689*************889********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.137458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-81873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-91873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-61858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSSSSS RTSKPSDDEI KELISKLQPL LPQLHHXRNA PVSASSILEE TCSYIKRLHR  60
EVEDLSQRIS QLLDSAGISD VDEELIRRLL QH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164152e-63bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393138.26e-57transcription factor PRE6-like
SwissprotQ9LJX17e-23PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A498I2Z48e-43A0A498I2Z4_MALDO; Uncharacterized protein
STRINGXP_008367547.14e-56(Malus domestica)
STRINGXP_008393138.14e-56(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.15e-16bHLH family protein