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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000218227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 92aa MW: 10593.5 Da PI: 9.7288 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k i++k +rqvtfskRr g++KKA ELSvLC++ev ++ifs +g+lye++s MDP0000218227 9 KLIDDKLRRQVTFSKRRSGLIKKARELSVLCGVEVGLVIFSAKGRLYEFCS 59 569**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.38 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.51E-33 | 2 | 59 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-27 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGRGKVELKL IDDKLRRQVT FSKRRSGLIK KARELSVLCG VEVGLVIFSA KGRLYEFCSG 60 ESARQELDSW LPIYLFFPFS VWEPDPLCIQ KI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14463 | 1e-100 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at early stage of flower development in the spikelet (rice flower) primordia and later in stamen and pistil primordia. Expressed during ovule development in the inner and outer integuments. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lodicules, stamens and carpels. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695, ECO:0000269|PubMed:9339904}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB524589 | 5e-85 | AB524589.1 Pyrus pyrifolia var. culta FLC mRNA for flowering locus C-like protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028965252.1 | 7e-36 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q9SAR1 | 1e-25 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | D4QDZ2 | 2e-34 | D4QDZ2_PYRPY; Flowering locus C-like protein | ||||
STRING | XP_009344924.1 | 4e-32 | (Pyrus x bretschneideri) | ||||
STRING | EMJ17361 | 5e-33 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-27 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000218227 |
Publications ? help Back to Top | |||
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