PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

MDP0000216521

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 249aa MW: 28386.8 Da PI: 5.3778

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000216521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	52.9	9.9e-17	200	238	38	76
EEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 38 leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 ++ f qqC fh+l +fD++krsCrrrLa+hnerr+k+ MDP0000216521 200 STKGFGQQCRIFHQLPDFDDTKRSCRRRLAGHNERRKKN 238 6788*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.981	155	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.8E-13	195	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-9	204	237	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	7.2E-5	204	225	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAPVPNTRPN GDDEDPRPIK QPRLGEAEDS KEEKPKLKLD TDPMALDDQS PLVEVEDEPE 60 VWEGMITDET TDNQFLIHCH NVLLPYDHMY VHKRATRFQT NCCLPQVSIT LSLLVATSFQ 120 DLQYQAITRP EMDVISRTMM XSSNLNPNTL MFALLAYQTM ENFFAEWWAL RSSSSLSSNG 180 GEGGAMRRCQ ADRLCLFLAS TKGFGQQCRI FHQLPDFDDT KRSCRRRLAG HNERRKKNLA 240 ESHVVEGSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	6e-14	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	MDP0000216521