PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216053
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 446aa    MW: 50662.8 Da    PI: 5.8658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216053genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-08189230854
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    + r RR++i ++ +eL +l+P a     +K++ ae+L+ A +Y+k L
  MDP0000216053 189 AARERRRKITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFL 230
                    6799******************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.722181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-10185239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10186239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-7187235No hitNo description
SMARTSM003538.5E-9187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5189230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAMSTATFCP IDDWGSLQLL NPPEMNMLSL PTQQKLQAAS SGIFDLQDDY YSLANSTNPE  60
YTCIDPLFQP YESSSENFLL PDFCSPTDNI NLALLAPEIC PPLDEYDFSY QPYPKCQKLF  120
HDQQVQYCNS NFVVAATSNY FTAYDPFLQS EILVPIQTHE VQIQNQPKAA KLDNKAVSGT  180
GTVSPQSIAA RERRRKITEK TQELGRLIPG ATKMNTAEML QAAYKYVKFL RAQVSVLKLM  240
TDSPIQQERK EERLHINQER LQVVASPIVQ EKLYSEEKCL VLKEFVEVLA KDDDIQSKPL  300
LKDKAVIINA NTTFAIPTRT KQRGEDANAE NSYRVAKISN YSHPWHASMY NVDIFSSDTG  360
EWRVSSITAP YTLLFHLLPG NIVRLAYNGM LFWMDVECLI LKHRVLMDPN ILLGNQLARH  420
SPVVKLLALD PHNNIRTSEW SKRAEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392315.10.0transcription factor bHLH52
TrEMBLA0A498JSR10.0A0A498JSR1_MALDO; Uncharacterized protein
STRINGXP_008392315.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.19e-23bHLH family protein