PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000215760
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 137aa    MW: 16370.1 Da    PI: 10.8266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000215760genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-19350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l ++v+++G g W+ ++r+ g++R++k+c++rw++yl
    MDP0000215760  3 KGAWTQQEDDILRQYVEKHGDGKWHQVPRETGLNRCRKSCRLRWLNYL 50
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.606154IPR017930Myb domain
SMARTSM007171.6E-15252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-22253IPR009057Homeodomain-like
PfamPF002492.7E-17350IPR001005SANT/Myb domain
SuperFamilySSF466894.9E-21478IPR009057Homeodomain-like
CDDcd001679.33E-11550No hitNo description
Gene3DG3DSA:1.10.10.602.0E-45477IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MRKGAWTQQE DDILRQYVEK HGDGKWHQVP RETGLNRCRK SCRLRWLNYL KPNLKSGDFT  60
EDEIDLIHRL QKLLGNRQVP LFGKQKKNRQ VILYSKQKPN ACMHELVIIK ILLTLKIVSK  120
QKNFIRSWES LPRHISQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-1117725100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6011221e-114KT601122.1 Pyrus x bretschneideri cultivar Red Zaosu MYB10b transcription factor mRNA, complete cds.
GenBankKT7487561e-114KT748756.1 Pyrus pyrifolia MYBa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017187858.22e-51transcription factor MYB114-like
SwissprotQ9FNV97e-33MY113_ARATH; Transcription factor MYB113
TrEMBLA0A498JZK52e-94A0A498JZK5_MALDO; Uncharacterized protein
STRINGXP_009362265.14e-49(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-35myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]