PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000215106

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 408aa MW: 45853.4 Da PI: 8.9918

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000215106	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.3	4.3e-15	247	289	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k MDP0000215106 247 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 289 79***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-14	236	290	No hit	No description
SMART	SM00338	5.5E-11	243	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.76	245	290	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-13	247	290	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.21E-24	247	292	No hit	No description
SuperFamily	SSF57959	6.25E-11	247	291	No hit	No description
PROSITE pattern	PS00036	0	250	265	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MGSQGGADGN CKQPQFQPLG RQNSMYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWSVE 60 ANQTMGIDIE GTTLVNQAQL QRQASLSLTS ALSKKTVDEV WRDIQQSKDE EEKKSQERQR 120 TLGEMTLEDF LVKAGVVAEA EASSDKQCAG PLVGVDANVA AQFPQGQWMQ YSQPQYQHPQ 180 QSMMGVYMPS QPIPPPMHVG AGAMMEVPYP DNQVPLPSPL MGALSDTPTP GRKRGNPEDI 240 VEKTVERRQK RMIKNRESAA RSRARKQAYT NELENKVSRL EEENERLRKQ KFYEPSKYQK 300 NSFWPVPVFG LYYGLVQMIK CKTVWIFLKD FHEHFKGLSL KDRKTKTKLL LLPALPMNVL 360 TTSSTLNIGI VSCSLNAFVD KQELEKVLPS APPPEPKYQL RRTSSAPL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MGSQGGADGN CKQPQFQPLG RQNSMYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWSVE  60
ANQTMGIDIE GTTLVNQAQL QRQASLSLTS ALSKKTVDEV WRDIQQSKDE EEKKSQERQR  120
TLGEMTLEDF LVKAGVVAEA EASSDKQCAG PLVGVDANVA AQFPQGQWMQ YSQPQYQHPQ  180
QSMMGVYMPS QPIPPPMHVG AGAMMEVPYP DNQVPLPSPL MGALSDTPTP GRKRGNPEDI  240
VEKTVERRQK RMIKNRESAA RSRARKQAYT NELENKVSRL EEENERLRKQ KFYEPSKYQK  300
NSFWPVPVFG LYYGLVQMIK CKTVWIFLKD FHEHFKGLSL KDRKTKTKLL LLPALPMNVL  360
TTSSTLNIGI VSCSLNAFVD KQELEKVLPS APPPEPKYQL RRTSSAPL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13554	0.0	bud\| fruit\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY786307	0.0	AY786307.1 Malus x domestica bZIP transcription factor (ZIP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008375407.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	6e-81	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	D9ZIQ3	0.0	D9ZIQ3_MALDO; BZIP domain class transcription factor
STRING	XP_008375404.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	7e-68	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	MDP0000215106

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]