PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000214729
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 353aa    MW: 40458.5 Da    PI: 8.2574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000214729genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-16171001199
                    HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +s+ l++p  f+ ++ +g +    +  l+ ++g + +v+l  + + ++ ++ +GW++Fvk++ L++gDf+vF +dg s+f  +vk++++
  MDP0000214729  17 DTSQGLRVPPAFIMKNfNGRS--LCKCDLKGPTGIRRTVEL--EERENGLFFHDGWQGFVKDHLLEAGDFLVFXYDGVSKF--NVKIYDR 100
                    455669******999975554..4489**************..*********************************99999..9999987 PP
2B343.46e-141972841099
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ ++++pk+ a + g+  +    +tl+d++grsW v+l+   +++     l++GW+e  kan++  gD++vF+++++s     v++frk
  MDP0000214729 197 RNRLYNVRIPKQLALDEGLTDKD--SVTLQDPDGRSWFVRLRTHYTDRFdyLNLSTGWRECGKANQISLGDTIVFEFVKQSVI--QVHIFRK 284
                    45556689******999888555..6***************76555555667799*********************9875555..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-184103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-194103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.637101IPR003340B3 DNA binding domain
CDDcd100171.12E-16899No hitNo description
SMARTSM010192.5E-1510101IPR003340B3 DNA binding domain
PfamPF023625.3E-1412100IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-19183285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-18184284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731188285IPR003340B3 DNA binding domain
SMARTSM010192.0E-8190285IPR003340B3 DNA binding domain
PfamPF023623.9E-12195284IPR003340B3 DNA binding domain
CDDcd100172.94E-11196283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MARKPKKPSF IKILAGDTSQ GLRVPPAFIM KNFNGRSLCK CDLKGPTGIR RTVELEEREN  60
GLFFHDGWQG FVKDHLLEAG DFLVFXYDGV SKFNVKIYDR SACEKDVEVA KMNKGNQARR  120
KVEVVDIDTE NVKAEVVDID TVNYSQDREK QMIFSSWSCD HLKSRKRPVS NYVEDTSTAS  180
ILLETENPCF LHFLNHRNRL YNVRIPKQLA LDEGLTDKDS VTLQDPDGRS WFVRLRTHYT  240
DRFDYLNLST GWRECGKANQ ISLGDTIVFE FVKQSVIQVH IFRKGEVRGN VCRLRESDVG  300
GGRERXAGGG RECEGELRES LQRGEVRGKW ASVCDFSLIP RLLCDEQKIF VPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366489.20.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A498IJ590.0A0A498IJ59_MALDO; Uncharacterized protein
STRINGXP_008366489.10.0(Malus domestica)
STRINGXP_008386193.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-15B3 family protein